Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF84_chr12_133032509_133068299	0/0	a0004	738	1	1	0	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF850_chr19_36738480_36777807	1/1	a0001	1090	387	83	71	172	14	45	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	a0002	1090	4	1	3	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	a0003	1090	2	2	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	a0004	1090	1	0	0	1	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	a0005	1090	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	a0006	1090	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	a0007	1090	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	a0008	1090	1	0	0	1	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	a0009	1090	1	0	0	0	0	1	copy fasta	ZNF850	chr19	36738480	36777807
ZNF850_chr19_36738480_36777807	0/0	a0010	1090	1	1	0	0	0	0	copy fasta	ZNF850	chr19	36738480	36777807
ZNF853_chr7_6610610_6629290	0/1	a0001	659	254	49	41	125	9	29	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	1/0	a0002	659	106	6	30	53	9	7	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	a0003	659	31	14	7	4	0	6	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	a0004	659	14	13	1	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	a0005	659	7	7	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	a0006	659	2	2	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	a0007	659	2	2	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	a0008	659	2	0	0	0	0	2	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	a0009	659	1	0	0	1	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	a0010	659	1	0	0	1	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	a0011	659	1	1	0	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF853_chr7_6610610_6629290	0/0	a0012	659	1	0	1	0	0	0	copy fasta	ZNF853	chr7	6610610	6629290
ZNF85_chr19_20918251_20955697	0/1	a0001	595	333	68	56	161	10	37	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	a0002	595	19	5	3	2	2	7	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	a0003	595	7	3	0	4	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	a0004	595	4	4	0	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	a0005	595	4	4	0	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	a0006	595	3	1	2	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	a0007	595	3	0	3	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	a0008	595	2	2	0	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	a0009	595	2	0	2	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	a0010	595	1	0	0	1	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	a0011	595	1	0	0	1	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	a0012	595	1	0	0	1	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	a0013	595	1	0	0	0	1	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	a0014	595	1	0	0	0	1	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF85_chr19_20918251_20955697	0/0	a0015	595	1	1	0	0	0	0	copy fasta	ZNF85	chr19	20918251	20955697
ZNF860_chr3_31976750_31996723	1/1	a0001	632	123	11	37	45	8	20	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	a0002	632	83	36	9	36	0	2	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	a0003	632	81	13	7	55	0	6	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	a0004	604	65	0	13	35	6	11	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	a0005	142	21	18	3	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	a0006	604	19	0	0	18	0	1	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	a0007	632	7	7	0	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	a0008	632	3	3	0	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	a0009	632	3	1	2	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	a0010	660	2	2	0	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	a0011	632	2	0	0	2	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	a0012	660	1	1	0	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723