Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF860_chr3_31976750_31996723	0/0	a0013	632	1	0	0	1	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	a0014	604	1	0	1	0	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	a0015	604	1	0	0	1	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF860_chr3_31976750_31996723	0/0	a0016	632	1	0	0	1	0	0	copy fasta	ZNF860	chr3	31976750	31996723
ZNF862_chr7_149833375_149872479	1/1	a0001	1169	307	70	63	128	13	31	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	a0002	1169	64	10	8	38	3	5	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	a0003	1169	12	0	1	11	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	a0004	1169	8	8	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	a0005	1169	5	5	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	a0006	1169	4	4	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	a0007	365	2	0	2	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	a0008	1169	2	0	2	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	a0009	1169	1	0	0	0	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	a0010	1169	1	0	0	1	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	a0011	1169	1	0	0	1	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	a0012	1169	1	1	0	0	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	a0013	1169	1	0	0	0	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	a0014	1169	1	0	0	0	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	a0015	1169	1	0	0	0	0	1	copy fasta	ZNF862	chr7	149833375	149872479
ZNF862_chr7_149833375_149872479	0/0	a0016	1169	1	0	0	1	0	0	copy fasta	ZNF862	chr7	149833375	149872479
ZNF865_chr19_55600647_55622269	1/1	a0001	1059	390	93	78	159	16	42	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	a0002	568	15	0	5	7	0	3	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	a0003	77	9	2	0	6	0	1	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	a0004	568	4	1	1	2	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	a0005	568	3	0	1	1	0	1	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	a0006	1059	3	2	1	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	a0007	1059	1	0	0	0	0	1	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	a0008	1059	1	0	1	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	a0009	970	1	0	1	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	a0010	1059	1	1	0	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	a0011	568	1	1	0	0	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF865_chr19_55600647_55622269	0/0	a0012	393	1	0	0	1	0	0	copy fasta	ZNF865	chr19	55600647	55622269
ZNF875_chr19_37329649_37369447	1/1	a0001	640	124	9	30	63	10	10	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	a0002	640	122	33	17	60	1	11	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	a0003	640	68	13	15	26	4	10	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	a0004	640	46	21	8	17	0	0	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	a0005	640	8	8	0	0	0	0	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	a0006	640	4	2	2	0	0	0	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	a0007	640	3	0	0	1	1	1	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	a0008	640	2	2	0	0	0	0	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	a0009	640	1	0	0	1	0	0	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	a0010	640	1	0	0	1	0	0	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	a0011	640	1	0	0	0	0	1	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	a0012	640	1	0	0	0	0	1	copy fasta	ZNF875	chr19	37329649	37369447
ZNF875_chr19_37329649_37369447	0/0	a0013	640	1	0	0	1	0	0	copy fasta	ZNF875	chr19	37329649	37369447
ZNF878_chr19_12038805_12057961	1/1	a0001	531	290	73	51	115	14	35	copy fasta	ZNF878	chr19	12038805	12057961
ZNF878_chr19_12038805_12057961	0/0	a0002	531	35	6	6	17	0	6	copy fasta	ZNF878	chr19	12038805	12057961
ZNF878_chr19_12038805_12057961	0/0	a0003	531	12	11	1	0	0	0	copy fasta	ZNF878	chr19	12038805	12057961
ZNF878_chr19_12038805_12057961	0/0	a0004	531	6	6	0	0	0	0	copy fasta	ZNF878	chr19	12038805	12057961
ZNF878_chr19_12038805_12057961	0/0	a0005	531	2	2	0	0	0	0	copy fasta	ZNF878	chr19	12038805	12057961