Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF92_chr7_65368855_65406136	0/0	a0006	586	1	0	0	0	0	1	copy fasta	ZNF92	chr7	65368855	65406136
ZNF93_chr19_19895946_19940575	0/0	a0000	0	8	6	2	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	1/1	a0001	620	258	66	46	99	9	36	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	a0002	620	81	6	6	65	1	3	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	a0003	536	23	0	6	17	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	a0004	620	6	4	2	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	a0005	620	2	0	2	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	a0006	620	2	0	2	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	a0007	620	2	2	0	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	a0008	620	1	0	0	1	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	a0009	452	1	0	0	1	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	a0010	620	1	1	0	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	a0011	620	1	0	0	1	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	a0012	620	1	0	0	0	0	1	copy fasta	ZNF93	chr19	19895946	19940575
ZNF93_chr19_19895946_19940575	0/0	a0013	620	1	1	0	0	0	0	copy fasta	ZNF93	chr19	19895946	19940575
ZNF98_chr19_22386019_22427346	1/0	a0001	572	225	50	41	98	8	27	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/1	a0002	572	119	15	24	63	7	9	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	a0003	572	11	10	1	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	a0004	572	5	5	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	a0005	572	4	4	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	a0006	572	3	0	2	0	1	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	a0007	572	3	3	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	a0008	572	2	2	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	a0009	572	1	1	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	a0010	572	1	0	0	1	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	a0011	572	1	1	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	a0012	572	1	1	0	0	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	a0013	572	1	0	0	1	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF98_chr19_22386019_22427346	0/0	a0014	572	1	0	0	1	0	0	copy fasta	ZNF98	chr19	22386019	22427346
ZNF99_chr19_22747183_22789151	0/0	a0000	0	57	13	9	28	2	5	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	1/1	a0001	864	161	33	30	76	6	14	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0002	864	54	8	11	30	2	3	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0003	864	51	24	3	24	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0004	864	2	2	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0005	864	2	0	1	0	0	1	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0006	864	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0007	864	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0008	864	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0009	1200	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0010	612	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0011	864	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0012	864	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0013	864	1	0	0	0	0	1	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0014	864	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0015	864	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0016	864	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0017	864	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0018	864	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0019	659	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0020	864	1	1	0	0	0	0	copy fasta	ZNF99	chr19	22747183	22789151