Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF99_chr19_22747183_22789151	0/0	a0021	864	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNF99_chr19_22747183_22789151	0/0	a0022	864	1	0	0	1	0	0	copy fasta	ZNF99	chr19	22747183	22789151
ZNFX1_chr20_49240900_49283057	0/0	a0001	1918	144	23	33	60	8	20	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	1/0	a0002	1918	109	16	19	59	1	13	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/1	a0003	1918	55	17	10	17	4	6	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	a0004	1918	36	0	3	30	0	3	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	a0005	1918	25	23	2	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	a0006	1918	8	0	3	0	0	5	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	a0007	1918	4	0	4	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	a0008	1918	4	4	0	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	a0009	1918	2	2	0	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	a0010	1918	1	1	0	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	a0011	1918	1	1	0	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	a0012	1918	1	0	0	1	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	a0013	1918	1	0	0	0	0	1	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	a0014	1918	1	0	0	1	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	a0015	1918	1	1	0	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	a0016	1918	1	0	0	1	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	a0017	1918	1	1	0	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	a0018	1918	1	0	0	1	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	a0019	1918	1	0	0	0	1	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNFX1_chr20_49240900_49283057	0/0	a0020	1918	1	1	0	0	0	0	copy fasta	ZNFX1	chr20	49240900	49283057
ZNG1A_chr9_115837_184056	1/1	a0001	395	234	66	37	96	8	25	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	a0002	395	139	15	42	62	4	16	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	a0003	395	11	0	1	10	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	a0004	395	4	4	0	0	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	a0005	395	2	2	0	0	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	a0006	395	1	0	0	1	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	a0007	395	1	1	0	0	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	a0008	395	1	0	0	1	0	0	copy fasta	ZNG1A	chr9	115837	184056
ZNG1A_chr9_115837_184056	0/0	a0009	395	1	0	0	0	0	1	copy fasta	ZNG1A	chr9	115837	184056
ZNG1B_chr2_113432691_113501204	1/1	a0001	395	159	50	34	42	6	25	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	a0002	395	94	12	22	48	3	9	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	a0003	395	20	20	0	0	0	0	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	a0004	395	1	0	0	1	0	0	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	a0005	395	1	0	0	0	1	0	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1B_chr2_113432691_113501204	0/0	a0006	395	1	0	0	1	0	0	copy fasta	ZNG1B	chr2	113432691	113501204
ZNG1C_chr9_68236983_68305035	0/0	a0001	270	208	56	46	79	12	15	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1C_chr9_68236983_68305035	0/0	a0002	395	98	16	11	60	4	7	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1C_chr9_68236983_68305035	0/0	a0003	270	15	3	3	9	0	0	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1C_chr9_68236983_68305035	0/0	a0004	395	1	1	0	0	0	0	copy fasta	ZNG1C	chr9	68236983	68305035
ZNG1E_chr9_65670928_65739041	0/0	a0001	395	126	24	20	66	7	9	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	a0002	287	55	5	12	28	3	7	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	a0003	395	7	1	5	1	0	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	a0004	395	5	2	0	3	0	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	a0005	395	4	2	2	0	0	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	a0006	287	1	0	0	1	0	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	a0007	395	1	1	0	0	0	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	a0008	395	1	0	1	0	0	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1E_chr9_65670928_65739041	0/0	a0009	395	1	1	0	0	0	0	copy fasta	ZNG1E	chr9	65670928	65739041