Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNG1E_chr9_65670928_65739041	0/0	a0010	395	1	0	0	1	0	0	copy fasta	ZNG1E	chr9	65670928	65739041
ZNG1F_chr9_41126309_41194317	1/1	a0001	395	229	62	48	84	5	28	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	a0002	395	41	6	9	21	1	4	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	a0003	395	20	0	0	18	0	2	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	a0004	395	6	6	0	0	0	0	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	a0005	395	5	0	0	5	0	0	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	a0006	395	1	1	0	0	0	0	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	a0007	395	1	1	0	0	0	0	copy fasta	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	a0008	395	1	0	1	0	0	0	copy fasta	ZNG1F	chr9	41126309	41194317
ZNHIT1_chr7_101213165_101229190	1/1	a0001	154	391	94	52	179	18	46	copy fasta	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	a0002	159	1	0	0	1	0	0	copy fasta	ZNHIT1	chr7	101213165	101229190
ZNHIT2_chr11_65111403_65122701	1/1	a0001	403	345	76	64	149	16	38	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	a0002	403	20	10	1	8	0	1	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	a0003	403	10	8	2	0	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	a0004	403	4	0	0	4	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	a0005	403	2	2	0	0	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	a0006	403	1	0	0	0	0	1	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	a0007	403	1	0	1	0	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT2_chr11_65111403_65122701	0/0	a0008	38	1	0	0	1	0	0	copy fasta	ZNHIT2	chr11	65111403	65122701
ZNHIT3_chr17_36481681_36500822	0/1	a0001	155	384	87	68	170	16	42	copy fasta	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	a0002	155	1	0	0	1	0	0	copy fasta	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	a0003	155	1	1	0	0	0	0	copy fasta	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	a0004	155	1	0	0	1	0	0	copy fasta	ZNHIT3	chr17	36481681	36500822
ZNHIT6_chr1_85644417_85713433	1/1	a0001	470	369	92	65	169	12	29	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	a0002	470	3	0	3	0	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	a0003	470	2	0	0	2	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	a0004	470	1	0	0	1	0	0	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNHIT6_chr1_85644417_85713433	0/0	a0005	470	1	0	0	0	0	1	copy fasta	ZNHIT6	chr1	85644417	85713433
ZNRD2_chr11_65565477_65576888	1/1	a0001	199	353	85	62	150	16	38	copy fasta	ZNRD2	chr11	65565477	65576888
ZNRD2_chr11_65565477_65576888	0/0	a0002	199	4	4	0	0	0	0	copy fasta	ZNRD2	chr11	65565477	65576888
ZNRD2_chr11_65565477_65576888	0/0	a0003	199	3	3	0	0	0	0	copy fasta	ZNRD2	chr11	65565477	65576888
ZNRF1_chr16_74994024_75115994	1/1	a0001	227	325	98	57	112	14	42	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	a0002	227	2	0	1	0	0	1	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF1_chr16_74994024_75115994	0/0	a0003	227	1	0	0	0	0	1	copy fasta	ZNRF1	chr16	74994024	75115994
ZNRF2_chr7_30279597_30372689	1/1	a0001	242	193	79	37	57	3	15	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	a0002	242	8	7	1	0	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	a0003	242	3	0	0	2	0	1	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	a0004	242	2	0	1	1	0	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF2_chr7_30279597_30372689	0/0	a0005	243	2	0	1	0	1	0	copy fasta	ZNRF2	chr7	30279597	30372689
ZNRF3_chr22_28878572_29062488	1/0	a0001	936	260	75	36	115	6	27	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	a0002	936	2	0	0	0	0	2	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	a0003	936	2	0	0	0	0	2	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	a0004	936	1	0	0	1	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/1	a0005	936	1	0	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	a0006	936	1	0	0	0	0	1	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	a0007	936	1	1	0	0	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	a0008	936	1	0	0	1	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	a0009	936	1	0	0	1	0	0	copy fasta	ZNRF3	chr22	28878572	29062488
ZNRF4_chr19_5450417_5461856	1/1	a0001	429	156	54	34	35	12	19	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	a0002	429	64	16	24	5	3	16	copy fasta	ZNRF4	chr19	5450417	5461856