Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNRF4_chr19_5450417_5461856	0/0	a0003	429	60	13	7	38	0	2	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	a0004	429	47	0	5	38	0	4	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	a0005	429	45	1	5	37	2	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	a0006	429	43	1	2	35	0	5	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	a0007	429	3	0	0	3	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	a0008	429	3	0	2	0	1	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	a0009	429	2	2	0	0	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	a0010	429	2	1	1	0	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	a0011	429	1	1	0	0	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	a0012	429	1	1	0	0	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	a0013	429	1	0	0	1	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	a0014	429	1	0	0	1	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	a0015	429	1	0	0	0	0	1	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	a0016	429	1	0	0	1	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	a0017	429	1	0	0	1	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	a0018	429	1	0	0	1	0	0	copy fasta	ZNRF4	chr19	5450417	5461856
ZNRF4_chr19_5450417_5461856	0/0	a0019	429	1	0	0	0	0	1	copy fasta	ZNRF4	chr19	5450417	5461856
ZP1_chr11_60862542_60880687	0/1	a0001	638	248	75	61	76	12	23	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	1/0	a0002	638	149	20	13	97	4	14	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	a0003	638	2	0	0	2	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	a0004	638	1	0	0	1	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	a0005	638	1	0	0	1	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	a0006	638	1	0	1	0	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	a0007	638	1	1	0	0	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	a0008	638	1	0	0	1	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	a0009	638	1	0	1	0	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	a0010	638	1	1	0	0	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	a0011	638	1	0	1	0	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	a0012	638	1	0	1	0	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	a0013	638	1	0	0	1	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	a0014	638	1	0	0	0	0	1	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	a0015	638	1	0	0	1	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	a0016	638	1	1	0	0	0	0	copy fasta	ZP1	chr11	60862542	60880687
ZP2_chr16_21192450_21216574	1/1	a0001	745	236	34	50	115	15	20	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	a0002	745	195	61	25	79	3	27	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	a0003	745	1	1	0	0	0	0	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	a0004	745	1	0	0	1	0	0	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	a0005	745	1	0	1	0	0	0	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	a0006	745	1	0	0	0	0	1	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	a0007	745	1	1	0	0	0	0	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	a0008	745	1	0	0	1	0	0	copy fasta	ZP2	chr16	21192450	21216574
ZP2_chr16_21192450_21216574	0/0	a0009	745	1	1	0	0	0	0	copy fasta	ZP2	chr16	21192450	21216574
ZP3_chr7_76419950_76447069	0/0	a0001	424	183	54	32	83	3	11	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	1/0	a0002	424	173	19	29	92	7	25	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/1	a0003	424	34	8	11	6	4	4	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	a0004	424	21	15	2	0	2	2	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	a0005	424	3	0	0	2	0	1	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	a0006	424	2	0	1	0	0	1	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	a0007	424	2	0	2	0	0	0	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	a0008	424	2	0	0	2	0	0	copy fasta	ZP3	chr7	76419950	76447069