Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZP3_chr7_76419950_76447069	0/0	a0009	424	1	0	0	1	0	0	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	a0010	424	1	0	1	0	0	0	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	a0011	424	1	0	0	0	0	1	copy fasta	ZP3	chr7	76419950	76447069
ZP3_chr7_76419950_76447069	0/0	a0012	424	1	0	0	0	0	1	copy fasta	ZP3	chr7	76419950	76447069
ZP4_chr1_237877404_237895922	1/1	a0001	540	410	74	75	195	18	46	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	a0002	540	7	7	0	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	a0003	540	5	0	0	5	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	a0004	540	5	5	0	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	a0005	540	5	4	1	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	a0006	540	4	0	0	4	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	a0007	540	2	2	0	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	a0008	540	2	2	0	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	a0009	540	1	0	0	1	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	a0010	540	1	0	1	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	a0011	540	1	0	0	1	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	a0012	540	1	1	0	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	a0013	540	1	1	0	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	a0014	312	1	0	0	1	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	a0015	540	1	0	0	1	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZP4_chr1_237877404_237895922	0/0	a0016	540	1	0	1	0	0	0	copy fasta	ZP4	chr1	237877404	237895922
ZPBP2_chr17_39863202_39882896	1/0	a0001	338	204	40	37	104	6	16	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	a0002	338	137	27	32	57	8	13	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	a0003	338	18	18	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	a0004	338	9	9	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/1	a0005	338	4	0	3	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	a0006	338	2	0	2	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	a0007	338	2	0	2	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	a0008	338	1	1	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	a0009	338	1	1	0	0	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	a0010	338	1	0	0	0	0	1	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP2_chr17_39863202_39882896	0/0	a0011	338	1	0	0	1	0	0	copy fasta	ZPBP2	chr17	39863202	39882896
ZPBP_chr7_49932441_50098246	1/1	a0001	351	270	72	47	91	14	44	copy fasta	ZPBP	chr7	49932441	50098246
ZPBP_chr7_49932441_50098246	0/0	a0002	351	7	0	0	7	0	0	copy fasta	ZPBP	chr7	49932441	50098246
ZPBP_chr7_49932441_50098246	0/0	a0003	351	1	0	1	0	0	0	copy fasta	ZPBP	chr7	49932441	50098246
ZPLD1_chr3_102430015_102484841	1/1	a0001	415	231	81	35	74	11	28	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	a0002	415	35	10	15	5	3	2	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	a0003	415	1	0	0	1	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	a0004	415	1	1	0	0	0	0	copy fasta	ZPLD1	chr3	102430015	102484841
ZPR1_chr11_116768799_116793023	1/1	a0001	459	430	88	61	223	17	39	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	a0002	459	16	5	11	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	a0003	459	3	0	2	0	1	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	a0004	459	2	0	2	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	a0005	459	2	0	0	2	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	a0006	459	2	0	2	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	a0007	459	1	0	0	1	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	a0008	459	1	0	0	0	0	1	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	a0009	459	1	0	1	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	a0010	459	1	1	0	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	a0011	459	1	0	1	0	0	0	copy fasta	ZPR1	chr11	116768799	116793023
ZRANB1_chr10_124937123_124993189	1/1	a0001	708	335	90	62	139	10	32	copy fasta	ZRANB1	chr10	124937123	124993189