Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZRANB1_chr10_124937123_124993189	0/0	a0002	708	2	2	0	0	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB1_chr10_124937123_124993189	0/0	a0003	708	1	0	0	1	0	0	copy fasta	ZRANB1	chr10	124937123	124993189
ZRANB2_chr1_71058291_71086035	1/1	a0001	330	417	95	70	192	14	44	copy fasta	ZRANB2	chr1	71058291	71086035
ZRANB2_chr1_71058291_71086035	0/0	a0002	330	17	3	12	0	0	2	copy fasta	ZRANB2	chr1	71058291	71086035
ZRANB3_chr2_135191969_135536218	1/1	a0001	1079	99	34	14	35	0	14	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	a0002	1079	68	34	10	15	0	9	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	a0003	1079	23	0	4	15	0	4	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	a0004	1079	14	0	5	8	0	1	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	a0005	1079	3	3	0	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	a0006	1079	3	3	0	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	a0007	1079	1	0	0	0	0	1	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	a0008	1079	1	0	0	0	0	1	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	a0009	1079	1	0	1	0	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	a0010	1079	1	0	0	1	0	0	copy fasta	ZRANB3	chr2	135191969	135536218
ZRSR2_chrX_15785484_15828260	1/1	a0001	482	313	70	55	145	11	30	copy fasta	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	a0002	484	7	6	0	1	0	0	copy fasta	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	a0003	482	1	0	1	0	0	0	copy fasta	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	a0004	482	1	0	0	1	0	0	copy fasta	ZRSR2	chrX	15785484	15828260
ZSCAN10_chr16_3083890_3104294	1/0	a0001	780	280	40	46	162	11	20	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/1	a0002	780	151	59	27	39	6	19	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	a0003	780	3	0	0	0	0	3	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	a0004	780	1	1	0	0	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	a0005	780	1	0	0	1	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	a0006	202	1	0	0	1	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	a0007	780	1	0	0	0	0	1	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	a0008	780	1	0	0	1	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	a0009	780	1	0	1	0	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	a0010	780	1	0	0	0	0	1	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	a0011	780	1	0	0	1	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	a0012	780	1	0	0	1	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	a0013	780	1	0	0	1	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	a0014	780	1	0	0	1	0	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	a0015	780	1	0	0	0	1	0	copy fasta	ZSCAN10	chr16	3083890	3104294
ZSCAN12_chr6_28379738_28404747	1/0	a0001	611	183	36	25	88	9	24	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/1	a0002	611	118	42	17	46	4	8	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	a0003	611	64	5	9	48	0	2	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	a0004	611	46	5	8	27	1	5	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	a0005	611	10	5	4	0	1	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	a0006	611	3	1	2	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	a0007	611	2	1	1	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	a0008	611	1	0	1	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	a0009	611	1	0	1	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	a0010	611	1	0	0	1	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	a0011	611	1	1	0	0	0	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	a0012	611	1	0	0	0	0	1	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	a0013	611	1	0	0	0	1	0	copy fasta	ZSCAN12	chr6	28379738	28404747
ZSCAN16_chr6_28119609_28135082	1/1	a0001	348	419	88	62	212	14	41	copy fasta	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	a0002	348	6	5	1	0	0	0	copy fasta	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	a0003	348	1	1	0	0	0	0	copy fasta	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	a0004	348	1	0	0	0	0	1	copy fasta	ZSCAN16	chr6	28119609	28135082