JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C1GALT1_chr7_7177544_7253616	0/0	a0002	363	3	0	3	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	a0003	363	2	2	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	a0004	363	1	0	0	1	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	a0005	363	1	0	1	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1QA_chr1_22631628_22644678	1/1	a0001	245	430	96	81	199	16	36	copy fasta	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	a0002	245	1	0	0	1	0	0	copy fasta	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	a0003	245	1	0	1	0	0	0	copy fasta	C1QA	chr1	22631628	22644678
C1QBP_chr17_5427777_5444155	1/1	a0001	282	405	93	78	174	12	46	copy fasta	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	a0002	282	2	0	2	0	0	0	copy fasta	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	a0003	282	1	1	0	0	0	0	copy fasta	C1QBP	chr17	5427777	5444155
C1QB_chr1_22648236_22666637	1/1	a0001	251	428	94	75	201	14	42	copy fasta	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	a0002	251	1	0	0	1	0	0	copy fasta	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	a0003	251	1	0	1	0	0	0	copy fasta	C1QB	chr1	22648236	22666637
C1QC_chr1_22638633_22653108	1/1	a0001	245	444	99	82	203	16	42	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	a0002	245	5	0	0	5	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	a0003	245	1	1	0	0	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QL1_chr17_44954693_44973303	1/1	a0001	258	408	92	72	178	14	50	copy fasta	C1QL1	chr17	44954693	44973303
C1QL2_chr2_119151243_119163751	1/1	a0001	287	409	95	66	178	18	50	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	a0002	287	3	3	0	0	0	0	copy fasta	C1QL2	chr2	119151243	119163751
C1QL3_chr10_16508734_16526879	1/1	a0001	255	460	98	84	216	16	44	copy fasta	C1QL3	chr10	16508734	16526879
C1QL4_chr12_49327409_49342188	1/1	a0001	238	295	92	54	93	14	40	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	a0002	238	2	2	0	0	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	a0003	238	2	0	0	2	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	a0004	238	1	0	0	1	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QTNF12_chr1_1237453_1251722	0/0	a0000	0	1	0	0	0	0	1	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	1/1	a0001	302	243	48	45	105	11	32	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	a0002	302	52	9	7	28	5	3	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	a0003	302	12	10	2	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	a0004	302	5	4	1	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	a0005	302	3	0	0	3	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	a0006	302	3	3	0	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	a0007	302	3	3	0	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	a0008	302	2	1	1	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	a0009	205	1	1	0	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	a0010	302	1	0	0	0	0	1	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	a0011	302	1	0	0	0	0	1	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	a0012	302	1	1	0	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF1_chr17_79019169_79054788	1/1	a0001	281	383	98	60	175	9	39	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	a0002	281	2	0	0	2	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	a0003	281	2	0	0	2	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	a0004	281	2	0	0	0	1	1	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	a0005	281	1	0	0	0	0	1	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	a0006	281	1	0	0	1	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	a0007	281	1	0	0	0	0	1	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF2_chr5_160342754_160375626	1/1	a0001	285	450	96	80	213	16	43	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	a0002	285	1	0	0	0	0	1	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	a0003	285	1	0	0	1	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF3_chr5_34012858_34048213	1/1	a0001	319	412	97	66	193	12	42	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	a0002	319	1	1	0	0	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	a0003	319	1	0	0	1	0	0	copy fasta	C1QTNF3	chr5	34012858	34048213