Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZSCAN23_chr6_28427655_28448491	0/0	a0004	389	1	1	0	0	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	a0005	389	1	1	0	0	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	a0006	389	1	0	0	1	0	0	copy fasta	ZSCAN23	chr6	28427655	28448491
ZSCAN25_chr7_99611946_99637408	1/1	a0001	544	347	86	50	159	14	36	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	a0002	544	14	10	4	0	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	a0003	544	1	0	0	1	0	0	copy fasta	ZSCAN25	chr7	99611946	99637408
ZSCAN26_chr6_28262143_28283204	1/1	a0001	479	254	40	51	112	12	37	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	a0002	479	64	23	11	29	1	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	a0003	479	58	3	8	46	0	1	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	a0004	479	27	10	1	13	1	2	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	a0005	479	16	15	1	0	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	a0006	479	2	0	0	0	0	2	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	a0007	479	1	0	1	0	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	a0008	147	1	1	0	0	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	a0009	479	1	0	1	0	0	0	copy fasta	ZSCAN26	chr6	28262143	28283204
ZSCAN29_chr15_43353175_43376043	0/0	a0001	852	175	52	14	97	1	11	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	1/1	a0002	852	161	3	33	99	7	17	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	a0003	852	31	13	7	0	4	7	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	a0004	852	13	13	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	a0005	851	6	6	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	a0006	852	2	0	0	0	0	2	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	a0007	852	1	1	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	a0008	852	1	0	0	1	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	a0009	852	1	1	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	a0010	852	1	1	0	0	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	a0011	852	1	0	0	1	0	0	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	a0012	852	1	0	0	0	0	1	copy fasta	ZSCAN29	chr15	43353175	43376043
ZSCAN2_chr15_84596009_84628716	0/1	a0001	614	368	97	55	172	11	32	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	1/0	a0002	614	38	3	13	3	2	16	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	a0003	614	1	0	0	1	0	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	a0004	614	1	0	0	0	1	0	copy fasta	ZSCAN2	chr15	84596009	84628716
ZSCAN30_chr18_35246062_35295229	1/0	a0001	494	315	79	52	143	15	25	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	a0002	494	55	10	9	34	1	1	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/1	a0003	494	10	6	2	0	0	1	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	a0004	494	1	0	0	1	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	a0005	494	1	1	0	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	a0006	494	1	0	1	0	0	0	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	a0007	494	1	0	0	0	0	1	copy fasta	ZSCAN30	chr18	35246062	35295229
ZSCAN31_chr6_28319737_28341148	0/1	a0001	406	159	29	24	87	5	13	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	1/0	a0002	406	124	3	29	61	7	23	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	a0003	406	84	42	14	26	1	1	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	a0004	406	30	13	1	13	1	2	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	a0005	406	8	6	2	0	0	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	a0006	322	8	0	2	5	0	1	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	a0007	406	2	0	0	0	0	2	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	a0008	406	1	1	0	0	0	0	copy fasta	ZSCAN31	chr6	28319737	28341148
ZSCAN32_chr16_3377085_3406004	1/1	a0001	697	280	52	56	122	12	36	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	a0002	697	83	36	10	29	1	7	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	a0003	697	22	1	14	0	5	2	copy fasta	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	a0004	697	2	0	2	0	0	0	copy fasta	ZSCAN32	chr16	3377085	3406004