Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZSCAN5B_chr19_56184686_56202783	0/0	a0029	495	1	1	0	0	0	0	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	a0030	495	1	0	0	0	0	1	copy fasta	ZSCAN5B	chr19	56184686	56202783
ZSCAN5C_chr19_56197273_56214461	0/0	a0000	0	4	4	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0001	496	96	17	15	54	7	3	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	1/1	a0002	496	85	4	12	39	4	24	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0003	496	63	3	4	48	0	8	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0004	496	51	6	26	14	2	3	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0005	496	45	1	11	33	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0006	496	26	15	6	5	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0007	496	18	6	2	6	2	2	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0008	496	11	0	0	11	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0009	496	6	6	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0010	496	5	0	2	0	2	1	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0011	496	5	1	1	0	1	2	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0012	496	5	1	0	4	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0013	496	4	1	1	1	0	1	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0014	496	4	4	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0015	496	3	3	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0016	496	3	3	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0017	496	3	3	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0018	496	3	0	0	3	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0019	496	2	0	2	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0020	496	2	0	0	2	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0021	496	2	0	1	1	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0022	496	2	2	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0023	496	2	2	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0024	496	2	2	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0025	496	2	2	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0026	496	2	1	1	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0027	496	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0028	496	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0029	496	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0030	496	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0031	496	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0032	496	1	0	0	1	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0033	496	1	0	0	0	0	1	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0034	496	1	0	0	1	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0035	496	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0036	496	1	0	0	1	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0037	496	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0038	496	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0039	496	1	0	0	0	0	1	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0040	496	1	1	0	0	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0041	496	1	0	0	1	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN5C_chr19_56197273_56214461	0/0	a0042	496	1	0	0	1	0	0	copy fasta	ZSCAN5C	chr19	56197273	56214461
ZSCAN9_chr6_28220275_28238487	1/1	a0001	394	413	90	70	195	14	42	copy fasta	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	a0002	362	1	1	0	0	0	0	copy fasta	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	a0003	394	1	0	0	1	0	0	copy fasta	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	a0004	394	1	1	0	0	0	0	copy fasta	ZSCAN9	chr6	28220275	28238487
ZSWIM1_chr20_45876227_45890266	1/1	a0001	485	381	94	62	176	15	32	copy fasta	ZSWIM1	chr20	45876227	45890266