Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZSWIM6_chr5_61327258_61551172	0/1	a0001	1210	177	69	28	50	9	20	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0002	1208	28	0	6	17	1	4	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0003	1211	25	9	11	0	3	2	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0004	1211	14	1	7	0	1	5	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0005	1209	7	0	0	7	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0006	1207	3	0	0	3	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0007	1212	2	2	0	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0008	1211	2	0	2	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0009	1215	2	0	0	0	0	2	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0010	1211	2	0	0	0	0	2	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0011	1209	2	0	0	2	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0012	1206	2	0	0	1	0	1	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0013	1200	1	0	1	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0014	1201	1	0	1	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0015	1211	1	1	0	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0016	1212	1	0	1	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0017	1211	1	0	1	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0018	1211	1	0	1	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0019	1210	1	1	0	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0020	1202	1	1	0	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	1/0	a0021	1215	1	0	0	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	a0022	1201	1	0	1	0	0	0	copy fasta	ZSWIM6	chr5	61327258	61551172
ZSWIM7_chr17_15971560_16004704	1/1	a0001	140	344	94	64	132	12	40	copy fasta	ZSWIM7	chr17	15971560	16004704
ZSWIM8_chr10_73780606_73806793	1/1	a0001	1834	311	80	54	126	12	37	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	a0002	1834	1	0	0	1	0	0	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	a0003	1834	1	0	0	1	0	0	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	a0004	1834	1	0	0	0	0	1	copy fasta	ZSWIM8	chr10	73780606	73806793
ZSWIM9_chr19_48165680_48202620	1/1	a0001	920	375	83	77	159	12	42	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	a0002	920	5	5	0	0	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	a0003	920	4	4	0	0	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	a0004	920	1	0	1	0	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	a0005	920	1	0	0	1	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	a0006	920	1	0	0	1	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	a0007	920	1	0	0	1	0	0	copy fasta	ZSWIM9	chr19	48165680	48202620
ZUP1_chr6_116630618_116673766	1/1	a0001	578	210	45	27	105	11	20	copy fasta	ZUP1	chr6	116630618	116673766
ZUP1_chr6_116630618_116673766	0/0	a0002	578	165	42	30	62	7	24	copy fasta	ZUP1	chr6	116630618	116673766
ZUP1_chr6_116630618_116673766	0/0	a0003	578	1	0	0	1	0	0	copy fasta	ZUP1	chr6	116630618	116673766
ZUP1_chr6_116630618_116673766	0/0	a0004	578	1	1	0	0	0	0	copy fasta	ZUP1	chr6	116630618	116673766
ZUP1_chr6_116630618_116673766	0/0	a0005	578	1	0	1	0	0	0	copy fasta	ZUP1	chr6	116630618	116673766
ZW10_chr11_113728187_113778692	1/1	a0001	779	402	88	70	190	12	40	copy fasta	ZW10	chr11	113728187	113778692
ZW10_chr11_113728187_113778692	0/0	a0002	779	5	0	0	5	0	0	copy fasta	ZW10	chr11	113728187	113778692
ZW10_chr11_113728187_113778692	0/0	a0003	779	3	0	0	3	0	0	copy fasta	ZW10	chr11	113728187	113778692
ZW10_chr11_113728187_113778692	0/0	a0004	779	2	2	0	0	0	0	copy fasta	ZW10	chr11	113728187	113778692
ZW10_chr11_113728187_113778692	0/0	a0005	779	1	0	0	0	0	1	copy fasta	ZW10	chr11	113728187	113778692
ZW10_chr11_113728187_113778692	0/0	a0006	779	1	0	0	0	0	1	copy fasta	ZW10	chr11	113728187	113778692
ZWILCH_chr15_66500326_66555130	1/0	a0001	591	315	82	48	146	8	30	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/1	a0002	591	62	3	15	26	5	12	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	a0003	591	25	4	5	11	1	4	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	a0004	591	3	3	0	0	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	a0005	591	1	1	0	0	0	0	copy fasta	ZWILCH	chr15	66500326	66555130