Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZWILCH_chr15_66500326_66555130	0/0	a0006	591	1	0	1	0	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	a0007	591	1	0	0	1	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	a0008	591	1	1	0	0	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	a0009	591	1	0	1	0	0	0	copy fasta	ZWILCH	chr15	66500326	66555130
ZWINT_chr10_56352227_56366259	0/1	a0001	277	311	52	60	160	10	28	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	1/0	a0002	277	61	14	10	22	4	10	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	a0003	277	45	18	8	18	0	1	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	a0004	277	9	0	0	8	0	1	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	a0005	279	6	6	0	0	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	a0006	277	3	3	0	0	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	a0007	277	3	3	0	0	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	a0008	277	1	1	0	0	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	a0009	279	1	1	0	0	0	0	copy fasta	ZWINT	chr10	56352227	56366259
ZXDA_chrX_57900430_57915458	1/0	a0001	799	172	35	27	82	7	20	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/1	a0002	799	80	3	17	47	2	10	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	a0003	799	17	14	3	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	a0004	799	13	13	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	a0005	799	6	0	3	3	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	a0006	799	5	4	0	1	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	a0007	801	4	0	0	4	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	a0008	799	4	2	2	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	a0009	799	4	0	0	4	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	a0010	799	2	0	1	0	0	1	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	a0011	803	2	0	0	2	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	a0012	799	2	1	1	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	a0013	799	2	2	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	a0014	799	1	0	0	1	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	a0015	799	1	1	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	a0016	799	1	1	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	a0017	799	1	1	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	a0018	525	1	1	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	a0019	766	1	1	0	0	0	0	copy fasta	ZXDA	chrX	57900430	57915458
ZXDA_chrX_57900430_57915458	0/0	a0020	218	1	0	0	0	0	1	copy fasta	ZXDA	chrX	57900430	57915458
ZXDB_chrX_57587011_57602477	1/1	a0001	803	266	64	43	125	9	23	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	a0002	806	11	1	10	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	a0003	803	4	0	2	0	0	2	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	a0004	803	3	3	0	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	a0005	803	3	0	0	2	0	1	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	a0006	803	2	0	0	2	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	a0007	803	1	0	0	1	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	a0008	806	1	0	0	1	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	a0009	799	1	0	1	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	a0010	803	1	0	0	1	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	a0011	803	1	1	0	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	a0012	803	1	1	0	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	a0013	805	1	0	1	0	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDB_chrX_57587011_57602477	0/0	a0014	803	1	0	0	1	0	0	copy fasta	ZXDB	chrX	57587011	57602477
ZXDC_chr3_126432601_126480891	0/1	a0001	858	350	73	58	164	12	42	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	a0002	858	15	0	10	4	0	1	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	1/0	a0003	858	6	5	0	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891