Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZXDC_chr3_126432601_126480891	0/0	a0004	858	5	5	0	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	a0005	858	3	2	1	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	a0006	858	2	0	0	2	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	a0007	858	2	2	0	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	a0008	858	1	0	0	1	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	a0009	858	1	0	1	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	a0010	858	1	1	0	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	a0011	858	1	0	0	0	0	1	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	a0012	858	1	0	0	1	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	a0013	858	1	1	0	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	a0014	858	1	1	0	0	0	0	copy fasta	ZXDC	chr3	126432601	126480891
ZYG11A_chr1_52837760_52899998	0/1	a0001	759	153	71	19	44	3	15	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	1/0	a0002	759	112	9	28	57	4	13	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	a0003	759	7	3	4	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	a0004	759	5	3	2	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	a0005	759	2	0	0	2	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	a0006	759	2	0	0	2	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	a0007	759	2	0	1	0	1	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	a0008	759	1	1	0	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	a0009	759	1	1	0	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	a0010	759	1	1	0	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	a0011	759	1	0	0	1	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	a0012	759	1	1	0	0	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	a0013	759	1	0	0	1	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11A_chr1_52837760_52899998	0/0	a0014	759	1	0	0	1	0	0	copy fasta	ZYG11A	chr1	52837760	52899998
ZYG11B_chr1_52721453_52832336	1/1	a0001	744	352	88	52	168	8	34	copy fasta	ZYG11B	chr1	52721453	52832336
ZYX_chr7_143376345_143396111	0/0	a0000	0	1	0	0	1	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	1/1	a0001	572	391	47	73	207	18	44	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	a0002	572	47	38	4	0	0	5	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	a0003	572	6	5	1	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	a0004	572	2	2	0	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	a0005	572	2	2	0	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	a0006	572	1	0	0	0	0	1	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	a0007	572	1	1	0	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	a0008	572	1	0	0	1	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	a0009	572	1	0	0	1	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	a0010	572	1	1	0	0	0	0	copy fasta	ZYX	chr7	143376345	143396111
ZZEF1_chr17_3999445_4148030	0/0	a0001	2961	92	9	27	43	2	11	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0002	2961	63	7	6	43	1	6	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0003	2961	26	2	6	11	1	6	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0004	2961	19	14	5	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0005	2961	19	17	2	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0006	2961	15	7	5	0	1	2	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0007	2961	10	10	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0008	2961	8	0	5	3	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0009	2961	6	6	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0010	2961	5	0	0	5	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0011	2961	5	5	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/1	a0012	2961	3	0	0	0	0	2	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0013	2961	3	3	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030