Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZZEF1_chr17_3999445_4148030	0/0	a0014	2961	3	3	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	1/0	a0015	2961	3	1	0	0	1	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0016	2961	2	0	0	2	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0017	2961	2	0	0	0	0	2	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0018	2961	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0019	2961	1	0	1	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0020	2961	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0021	2961	1	0	1	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0022	2961	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0023	2961	1	0	0	0	0	1	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0024	2961	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0025	2961	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0026	2961	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0027	2961	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0028	2961	1	0	0	1	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZEF1_chr17_3999445_4148030	0/0	a0029	2961	1	1	0	0	0	0	copy fasta	ZZEF1	chr17	3999445	4148030
ZZZ3_chr1_77557416_77687658	1/1	a0001	903	327	84	53	142	8	38	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	a0002	903	8	0	4	4	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	a0003	903	4	0	0	4	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	a0004	903	2	0	2	0	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	a0005	903	2	0	0	2	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	a0006	903	1	0	1	0	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	a0007	903	1	0	0	1	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	a0008	903	1	0	1	0	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	a0009	903	1	0	1	0	0	0	copy fasta	ZZZ3	chr1	77557416	77687658
ZZZ3_chr1_77557416_77687658	0/0	a0010	903	1	0	0	1	0	0	copy fasta	ZZZ3	chr1	77557416	77687658