JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C1QTNF4_chr11_47584667_47599411	1/1	a0001	329	394	87	70	181	13	41	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	a0002	329	11	0	7	0	3	1	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	a0003	329	1	0	1	0	0	0	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	a0004	329	1	1	0	0	0	0	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	a0005	17	1	0	0	1	0	0	copy fasta	C1QTNF4	chr11	47584667	47599411
C1QTNF5_chr11_119333942_119345883	1/1	a0001	243	384	89	76	165	14	38	copy fasta	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	a0002	243	2	0	0	0	0	2	copy fasta	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	a0003	80	1	0	0	1	0	0	copy fasta	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	a0004	243	1	1	0	0	0	0	copy fasta	C1QTNF5	chr11	119333942	119345883
C1QTNF6_chr22_37175166_37193247	1/0	a0001	278	157	41	11	84	4	16	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	a0002	278	130	11	14	90	2	13	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	a0003	278	55	11	16	14	3	11	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	a0004	278	39	11	19	1	3	5	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/1	a0005	278	28	4	17	0	5	1	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	a0006	278	24	18	1	5	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	a0007	278	7	1	2	0	0	4	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	a0008	278	1	0	0	0	1	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	a0009	278	1	0	1	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	a0010	278	1	1	0	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	a0011	278	1	0	1	0	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	a0012	278	1	0	0	1	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	a0013	278	1	0	0	1	0	0	copy fasta	C1QTNF6	chr22	37175166	37193247
C1QTNF7_chr4_15423033_15451167	1/1	a0001	289	442	98	74	210	18	40	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	a0002	289	1	0	0	1	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	a0003	289	1	0	0	1	0	0	copy fasta	C1QTNF7	chr4	15423033	15451167
C1QTNF8_chr16_1083226_1101244	0/0	a0000	0	9	7	2	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	1/1	a0001	252	381	85	69	158	17	50	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	a0002	252	2	0	0	2	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	a0003	252	1	0	1	0	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	a0004	252	1	0	0	1	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	a0005	252	1	0	0	0	1	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	a0006	252	1	0	0	1	0	0	copy fasta	C1QTNF8	chr16	1083226	1101244
C1QTNF9B_chr13_23886099_23902502	1/0	a0001	333	242	49	46	101	11	34	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	a0002	333	141	22	25	83	3	8	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/1	a0003	333	17	3	7	0	2	4	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	a0004	333	11	10	1	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	a0005	333	4	4	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	a0006	333	3	0	3	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	a0007	333	3	3	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	a0008	333	1	1	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	a0009	333	1	1	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	a0010	333	1	1	0	0	0	0	copy fasta	C1QTNF9B	chr13	23886099	23902502
C1QTNF9_chr13_24304580_24327531	0/1	a0001	333	267	41	50	128	12	35	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	a0002	333	89	11	11	58	1	8	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	a0003	333	41	12	6	19	2	2	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	a0004	333	24	13	3	0	3	5	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	1/0	a0005	333	12	9	2	0	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	a0006	333	10	0	1	9	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	a0007	333	9	8	0	1	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	a0008	75	5	0	0	5	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531