Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACAP2_chr3_195269745_195448020	0/0	a0002	778	1	0	0	1	0	0	copy fasta	ACAP2	chr3	195269745	195448020
ACAP3_chr1_1287391_1312930	1/0	a0001	834	284	82	47	99	16	39	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	a0002	834	3	0	3	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	a0003	834	3	3	0	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	a0004	834	1	0	0	1	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	a0005	834	1	0	0	1	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	a0006	834	1	0	0	0	0	1	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	a0007	834	1	0	0	1	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	a0008	834	1	1	0	0	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAT1_chr11_108116567_108152603	1/1	a0001	427	253	85	37	101	7	21	copy fasta	ACAT1	chr11	108116567	108152603
ACAT1_chr11_108116567_108152603	0/0	a0002	427	133	7	23	75	7	21	copy fasta	ACAT1	chr11	108116567	108152603
ACAT2_chr6_159757045_159784112	1/0	a0001	397	263	63	31	137	6	25	copy fasta	ACAT2	chr6	159757045	159784112
ACAT2_chr6_159757045_159784112	0/1	a0002	397	139	27	47	35	8	21	copy fasta	ACAT2	chr6	159757045	159784112
ACAT2_chr6_159757045_159784112	0/0	a0003	397	1	0	0	1	0	0	copy fasta	ACAT2	chr6	159757045	159784112
ACAT2_chr6_159757045_159784112	0/0	a0004	397	1	0	0	1	0	0	copy fasta	ACAT2	chr6	159757045	159784112
ACBD3_chr1_226139679_226191741	1/0	a0001	528	202	41	19	104	5	32	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/1	a0002	528	184	33	52	77	6	15	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	a0003	528	3	0	0	3	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	a0004	528	2	0	1	0	1	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	a0005	528	2	2	0	0	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	a0006	528	1	0	1	0	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	a0007	528	1	0	1	0	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	a0008	528	1	0	0	0	0	1	copy fasta	ACBD3	chr1	226139679	226191741
ACBD4_chr17_45130687_45149176	1/1	a0001	305	415	70	78	200	16	49	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	a0002	305	29	23	2	3	0	1	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	a0003	305	5	0	0	5	0	0	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	a0004	305	1	0	0	1	0	0	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	a0005	305	1	0	0	1	0	0	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	a0006	305	1	1	0	0	0	0	copy fasta	ACBD4	chr17	45130687	45149176
ACBD5_chr10_27190214_27245797	1/1	a0001	525	319	79	51	146	8	33	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	a0002	525	35	13	13	7	2	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	a0003	525	25	0	0	24	0	1	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	a0004	525	2	0	0	2	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	a0005	525	1	0	0	1	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	a0006	525	1	0	0	1	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	a0007	525	1	0	0	1	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD6_chr1_180283230_180507577	1/1	a0001	282	334	86	62	152	8	24	copy fasta	ACBD6	chr1	180283230	180507577
ACBD7_chr10_15070475_15093776	1/1	a0001	88	424	94	83	188	17	40	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	a0002	88	2	0	1	0	1	0	copy fasta	ACBD7	chr10	15070475	15093776
ACCSL_chr11_44042981_44064977	0/1	a0001	568	318	82	42	148	15	30	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	1/0	a0002	568	101	12	32	43	1	12	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	a0003	568	15	0	0	15	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	a0004	529	4	4	0	0	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	a0005	568	3	0	0	3	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	a0006	568	1	1	0	0	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	a0007	568	1	0	0	1	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	a0008	568	1	0	0	1	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	a0009	568	1	0	0	1	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	a0010	568	1	1	0	0	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCS_chr11_44061270_44089237	1/0	a0001	501	198	16	44	103	5	29	copy fasta	ACCS	chr11	44061270	44089237