JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C1QTNF9_chr13_24304580_24327531	0/0	a0009	333	5	5	0	0	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	a0010	333	1	0	1	0	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	a0011	333	1	1	0	0	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	a0012	333	1	0	0	1	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	a0013	333	1	0	0	1	0	0	copy fasta	C1QTNF9	chr13	24304580	24327531
C1RL_chr12_7089554_7114214	1/1	a0001	487	257	45	38	139	13	20	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	a0002	487	164	47	30	61	2	24	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	a0003	487	8	1	6	0	0	1	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	a0004	487	2	2	0	0	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	a0005	487	1	0	0	1	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	a0006	487	1	0	0	1	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	a0007	487	1	0	0	1	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	a0008	487	1	1	0	0	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	a0009	487	1	0	0	0	0	1	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	a0010	487	1	0	0	1	0	0	copy fasta	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	a0011	487	1	0	0	0	1	0	copy fasta	C1RL	chr12	7089554	7114214
C1R_chr12_7075219_7097445	0/0	a0001	705	143	44	46	30	4	19	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	a0002	705	74	13	7	46	2	6	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	a0003	705	58	7	5	38	4	4	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	a0004	705	24	0	1	22	0	1	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	a0005	705	8	0	5	2	0	1	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	a0006	705	4	0	0	4	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	a0007	705	1	0	1	0	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	a0008	705	1	0	1	0	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	a0009	705	1	0	0	1	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	a0010	705	1	1	0	0	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	a0011	705	1	0	0	1	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	a0012	705	1	1	0	0	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	a0013	705	1	0	0	0	0	1	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	a0014	705	1	0	0	1	0	0	copy fasta	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	a0015	705	1	0	0	1	0	0	copy fasta	C1R	chr12	7075219	7097445
C1S_chr12_7055718_7076032	1/1	a0001	688	303	75	60	119	11	36	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	a0002	688	41	8	6	20	3	4	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	a0003	688	14	0	0	14	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	a0004	688	4	4	0	0	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	a0005	688	3	3	0	0	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	a0006	688	2	2	0	0	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	a0007	688	1	0	0	1	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	a0008	688	1	0	1	0	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	a0009	688	1	0	1	0	0	0	copy fasta	C1S	chr12	7055718	7076032
C1orf100_chr1_244347635_244394663	1/1	a0001	147	449	99	82	202	17	47	copy fasta	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	a0002	147	1	1	0	0	0	0	copy fasta	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	a0003	147	1	0	0	0	1	0	copy fasta	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	a0004	147	1	0	0	0	0	1	copy fasta	C1orf100	chr1	244347635	244394663
C1orf105_chr1_172415685_172473829	0/1	a0001	183	263	51	54	113	12	32	copy fasta	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	1/0	a0002	183	40	25	13	0	1	0	copy fasta	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	a0003	183	14	5	5	0	1	3	copy fasta	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	a0004	183	1	1	0	0	0	0	copy fasta	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	a0005	183	1	0	0	1	0	0	copy fasta	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	a0006	183	1	0	0	0	0	1	copy fasta	C1orf105	chr1	172415685	172473829