JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C1orf109_chr1_37676570_37695529	1/1	a0001	203	427	94	72	196	17	46	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	a0002	203	4	4	0	0	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	a0003	203	1	0	0	0	1	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf115_chr1_220685363_220704153	1/1	a0001	142	393	92	72	173	16	38	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	a0002	142	1	0	0	1	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf116_chr1_207013522_207037756	0/1	a0001	601	332	50	68	162	16	35	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	a0002	601	17	16	1	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	a0003	601	8	7	1	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	a0004	601	6	6	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	a0005	601	5	4	1	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	a0006	601	5	5	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	1/0	a0007	601	4	0	2	0	0	1	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	a0008	601	3	3	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	a0009	601	2	0	0	2	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	a0010	601	2	1	1	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	a0011	601	1	1	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	a0012	601	1	1	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	a0013	601	1	1	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	a0014	601	1	0	0	1	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	a0015	601	1	0	0	1	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	a0016	601	1	1	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf122_chr1_37802790_37814454	1/1	a0001	110	411	81	72	200	14	42	copy fasta	C1orf122	chr1	37802790	37814454
C1orf122_chr1_37802790_37814454	0/0	a0002	110	7	5	2	0	0	0	copy fasta	C1orf122	chr1	37802790	37814454
C1orf122_chr1_37802790_37814454	0/0	a0003	110	1	0	1	0	0	0	copy fasta	C1orf122	chr1	37802790	37814454
C1orf122_chr1_37802790_37814454	0/0	a0004	110	1	0	1	0	0	0	copy fasta	C1orf122	chr1	37802790	37814454
C1orf127_chr1_10941475_10987076	1/1	a0001	823	264	55	52	114	14	27	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	a0002	823	86	6	20	48	2	10	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	a0003	823	12	8	0	1	0	3	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	a0004	823	9	9	0	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	a0005	823	7	7	0	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	a0006	823	4	2	1	1	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	a0007	823	2	2	0	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	a0008	823	1	1	0	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	a0009	112	1	0	0	1	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	a0010	823	1	1	0	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	a0011	823	1	0	0	1	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	a0012	823	1	0	1	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	a0013	823	1	0	0	1	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	a0014	823	1	1	0	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	a0015	823	1	0	0	1	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf131_chr1_231218765_231246175	1/1	a0001	293	389	92	59	178	17	41	copy fasta	C1orf131	chr1	231218765	231246175
C1orf131_chr1_231218765_231246175	0/0	a0002	293	45	1	12	27	1	4	copy fasta	C1orf131	chr1	231218765	231246175
C1orf131_chr1_231218765_231246175	0/0	a0003	293	3	2	1	0	0	0	copy fasta	C1orf131	chr1	231218765	231246175
C1orf131_chr1_231218765_231246175	0/0	a0004	293	3	3	0	0	0	0	copy fasta	C1orf131	chr1	231218765	231246175
C1orf131_chr1_231218765_231246175	0/0	a0005	293	1	0	0	1	0	0	copy fasta	C1orf131	chr1	231218765	231246175
C1orf131_chr1_231218765_231246175	0/0	a0006	293	1	0	0	0	0	1	copy fasta	C1orf131	chr1	231218765	231246175
C1orf141_chr1_67087165_67139970	0/0	a0001	400	236	75	48	80	12	21	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	a0002	400	34	17	3	11	1	2	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	1/1	a0003	400	16	2	3	4	5	0	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	a0004	400	13	0	2	11	0	0	copy fasta	C1orf141	chr1	67087165	67139970