JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C1orf141_chr1_67087165_67139970	0/0	a0005	400	1	0	0	0	0	1	copy fasta	C1orf141	chr1	67087165	67139970
C1orf146_chr1_92212915_92250813	1/1	a0001	180	269	73	60	92	12	30	copy fasta	C1orf146	chr1	92212915	92250813
C1orf146_chr1_92212915_92250813	0/0	a0002	180	8	8	0	0	0	0	copy fasta	C1orf146	chr1	92212915	92250813
C1orf146_chr1_92212915_92250813	0/0	a0003	180	1	0	0	1	0	0	copy fasta	C1orf146	chr1	92212915	92250813
C1orf146_chr1_92212915_92250813	0/0	a0004	180	1	1	0	0	0	0	copy fasta	C1orf146	chr1	92212915	92250813
C1orf146_chr1_92212915_92250813	0/0	a0005	180	1	0	0	1	0	0	copy fasta	C1orf146	chr1	92212915	92250813
C1orf159_chr1_1076823_1121089	1/1	a0001	198	320	91	54	118	14	41	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	a0002	198	2	0	0	2	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	a0003	198	1	0	0	1	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	a0004	198	1	0	0	1	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	a0005	198	1	1	0	0	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	a0006	198	1	0	0	0	0	1	copy fasta	C1orf159	chr1	1076823	1121089
C1orf162_chr1_111468984_111483512	1/1	a0001	130	399	84	64	194	13	42	copy fasta	C1orf162	chr1	111468984	111483512
C1orf162_chr1_111468984_111483512	0/0	a0002	130	71	14	12	34	3	8	copy fasta	C1orf162	chr1	111468984	111483512
C1orf162_chr1_111468984_111483512	0/0	a0003	130	5	0	0	5	0	0	copy fasta	C1orf162	chr1	111468984	111483512
C1orf162_chr1_111468984_111483512	0/0	a0004	130	1	0	0	1	0	0	copy fasta	C1orf162	chr1	111468984	111483512
C1orf167_chr1_11757193_11794585	0/0	a0001	1449	148	14	44	70	6	14	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/1	a0002	1449	42	0	10	15	3	13	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0003	1449	20	0	4	15	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0004	1449	11	5	4	0	1	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	1/0	a0005	1449	11	9	1	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0006	1449	11	11	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0007	1449	9	4	0	1	1	3	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0008	1449	8	0	1	7	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0009	1449	8	8	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0010	1449	6	6	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0011	1449	4	4	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0012	1449	4	3	1	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0013	443	4	4	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0014	1449	4	4	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0015	1449	3	3	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0016	1449	3	1	0	1	1	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0017	1449	3	3	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0018	1098	3	0	2	0	1	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0019	1449	3	3	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0020	1449	3	3	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0021	1449	3	0	0	2	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0022	1449	2	0	0	2	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0023	1449	2	0	1	0	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0024	1449	2	2	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0025	1449	2	0	0	2	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0026	1449	2	0	0	2	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0027	1449	2	0	0	2	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0028	1449	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0029	1449	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0030	1449	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0031	1449	1	0	0	0	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0032	525	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0033	1449	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0034	1449	1	0	0	0	0	1	copy fasta	C1orf167	chr1	11757193	11794585