JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C1orf167_chr1_11757193_11794585	0/0	a0035	1449	1	0	0	0	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0036	1449	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0037	1449	1	0	0	0	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0038	1449	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0039	1449	1	0	0	0	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0040	1449	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0041	1449	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0042	1449	1	0	0	0	1	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0043	1449	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0044	1449	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0045	1449	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0046	1021	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0047	1449	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0048	1449	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0049	1449	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0050	1449	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0051	1449	1	0	0	0	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0052	1449	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0053	1449	1	0	0	0	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	a0054	1449	1	0	0	0	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf174_chr1_3884133_3905272	0/1	a0001	243	384	85	61	179	17	41	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	a0002	243	41	0	11	29	0	1	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	a0003	243	5	5	0	0	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	a0004	243	4	4	0	0	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	a0005	243	2	0	0	0	0	2	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	a0006	243	1	1	0	0	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	a0007	243	1	1	0	0	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	a0008	243	1	0	0	0	1	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	1/0	a0009	243	1	0	0	0	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf185_chr1_51097228_51153086	1/1	a0001	199	246	76	26	108	6	28	copy fasta	C1orf185	chr1	51097228	51153086
C1orf185_chr1_51097228_51153086	0/0	a0002	199	2	2	0	0	0	0	copy fasta	C1orf185	chr1	51097228	51153086
C1orf198_chr1_230832119_230873521	1/1	a0001	327	391	62	70	191	16	50	copy fasta	C1orf198	chr1	230832119	230873521
C1orf198_chr1_230832119_230873521	0/0	a0002	327	28	24	4	0	0	0	copy fasta	C1orf198	chr1	230832119	230873521
C1orf198_chr1_230832119_230873521	0/0	a0003	327	8	8	0	0	0	0	copy fasta	C1orf198	chr1	230832119	230873521
C1orf198_chr1_230832119_230873521	0/0	a0004	327	1	0	0	1	0	0	copy fasta	C1orf198	chr1	230832119	230873521
C1orf202_chr1_244724701_244736015	1/1	a0001	182	319	56	59	157	14	31	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	a0002	182	56	3	9	32	2	10	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	a0003	182	32	27	4	0	0	1	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	a0004	182	5	5	0	0	0	0	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	a0005	182	2	2	0	0	0	0	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	a0006	182	2	2	0	0	0	0	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	a0007	182	1	0	0	1	0	0	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	a0008	182	1	1	0	0	0	0	copy fasta	C1orf202	chr1	244724701	244736015
C1orf210_chr1_43276877_43290581	1/1	a0001	113	431	85	81	204	16	43	copy fasta	C1orf210	chr1	43276877	43290581
C1orf210_chr1_43276877_43290581	0/0	a0002	113	7	7	0	0	0	0	copy fasta	C1orf210	chr1	43276877	43290581
C1orf210_chr1_43276877_43290581	0/0	a0003	113	3	2	1	0	0	0	copy fasta	C1orf210	chr1	43276877	43290581
C1orf210_chr1_43276877_43290581	0/0	a0004	113	1	0	0	0	0	1	copy fasta	C1orf210	chr1	43276877	43290581
C1orf216_chr1_35708877_35723884	1/1	a0001	229	369	95	72	136	16	48	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	a0002	229	6	0	0	6	0	0	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	a0003	229	1	1	0	0	0	0	copy fasta	C1orf216	chr1	35708877	35723884