JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C1orf21_chr1_184382029_184634019	1/1	a0001	121	232	92	34	74	8	22	copy fasta	C1orf21	chr1	184382029	184634019
C1orf226_chr1_162376728_162391812	1/1	a0001	272	469	98	82	225	14	48	copy fasta	C1orf226	chr1	162376728	162391812
C1orf226_chr1_162376728_162391812	0/0	a0002	272	2	0	0	2	0	0	copy fasta	C1orf226	chr1	162376728	162391812
C1orf226_chr1_162376728_162391812	0/0	a0003	272	1	0	0	1	0	0	copy fasta	C1orf226	chr1	162376728	162391812
C1orf226_chr1_162376728_162391812	0/0	a0004	272	1	0	0	1	0	0	copy fasta	C1orf226	chr1	162376728	162391812
C1orf226_chr1_162376728_162391812	0/0	a0005	272	1	0	0	1	0	0	copy fasta	C1orf226	chr1	162376728	162391812
C1orf232_chr1_26159101_26173963	0/0	a0001	186	216	14	46	132	6	18	copy fasta	C1orf232	chr1	26159101	26173963
C1orf232_chr1_26159101_26173963	1/1	a0002	186	165	75	32	25	8	23	copy fasta	C1orf232	chr1	26159101	26173963
C1orf232_chr1_26159101_26173963	0/0	a0003	186	16	5	2	8	0	1	copy fasta	C1orf232	chr1	26159101	26173963
C1orf232_chr1_26159101_26173963	0/0	a0004	186	1	1	0	0	0	0	copy fasta	C1orf232	chr1	26159101	26173963
C1orf232_chr1_26159101_26173963	0/0	a0005	186	1	0	0	1	0	0	copy fasta	C1orf232	chr1	26159101	26173963
C1orf232_chr1_26159101_26173963	0/0	a0006	186	1	1	0	0	0	0	copy fasta	C1orf232	chr1	26159101	26173963
C1orf35_chr1_228095731_228108325	1/1	a0001	263	410	91	68	197	11	41	copy fasta	C1orf35	chr1	228095731	228108325
C1orf35_chr1_228095731_228108325	0/0	a0002	263	3	0	1	0	2	0	copy fasta	C1orf35	chr1	228095731	228108325
C1orf35_chr1_228095731_228108325	0/0	a0003	263	3	3	0	0	0	0	copy fasta	C1orf35	chr1	228095731	228108325
C1orf35_chr1_228095731_228108325	0/0	a0004	263	2	0	0	0	1	1	copy fasta	C1orf35	chr1	228095731	228108325
C1orf35_chr1_228095731_228108325	0/0	a0005	263	1	0	1	0	0	0	copy fasta	C1orf35	chr1	228095731	228108325
C1orf35_chr1_228095731_228108325	0/0	a0006	263	1	0	0	1	0	0	copy fasta	C1orf35	chr1	228095731	228108325
C1orf43_chr1_154201720_154225590	1/1	a0001	253	371	93	67	162	10	37	copy fasta	C1orf43	chr1	154201720	154225590
C1orf43_chr1_154201720_154225590	0/0	a0002	253	1	0	0	0	0	1	copy fasta	C1orf43	chr1	154201720	154225590
C1orf43_chr1_154201720_154225590	0/0	a0003	253	1	0	1	0	0	0	copy fasta	C1orf43	chr1	154201720	154225590
C1orf43_chr1_154201720_154225590	0/0	a0004	253	1	1	0	0	0	0	copy fasta	C1orf43	chr1	154201720	154225590
C1orf50_chr1_42762249_42784491	1/1	a0001	199	412	92	71	190	14	43	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	a0002	199	3	3	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	a0003	199	2	1	1	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	a0004	199	1	0	0	0	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf52_chr1_85244953_85264662	1/1	a0001	182	436	91	81	212	14	36	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	a0002	182	1	1	0	0	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	a0003	182	1	0	1	0	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf53_chr1_197897630_197912362	1/1	a0001	145	436	90	80	209	14	41	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	a0002	145	3	3	0	0	0	0	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	a0003	145	2	0	0	0	0	2	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	a0004	145	1	0	0	1	0	0	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	a0005	145	1	1	0	0	0	0	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	a0006	145	1	0	0	0	0	1	copy fasta	C1orf53	chr1	197897630	197912362
C1orf54_chr1_150267790_150285916	1/1	a0001	131	430	92	76	198	16	46	copy fasta	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	a0002	131	3	3	0	0	0	0	copy fasta	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	a0003	131	1	1	0	0	0	0	copy fasta	C1orf54	chr1	150267790	150285916
C1orf56_chr1_151042751_151056420	1/1	a0001	341	324	77	56	130	16	43	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	a0002	341	10	10	0	0	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	a0003	341	5	5	0	0	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	a0004	341	2	2	0	0	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	a0005	341	1	0	0	0	0	1	copy fasta	C1orf56	chr1	151042751	151056420
C1orf74_chr1_209774208_209789559	1/1	a0001	269	384	75	67	187	14	39	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	a0002	269	61	19	9	22	4	7	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	a0003	269	1	0	0	1	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf87_chr1_59985394_60078770	0/0	a0001	546	176	43	31	86	2	14	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	1/1	a0002	546	137	24	27	63	6	15	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	a0003	546	40	3	9	22	2	4	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	a0004	546	8	0	0	7	0	1	copy fasta	C1orf87	chr1	59985394	60078770