JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C1orf87_chr1_59985394_60078770	0/0	a0005	546	6	6	0	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	a0006	546	3	2	1	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	a0007	546	3	0	0	3	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	a0008	546	2	2	0	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	a0009	546	2	0	2	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	a0010	546	1	1	0	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	a0011	498	1	1	0	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	a0012	546	1	0	1	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	a0013	546	1	0	0	1	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	a0014	546	1	0	1	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf94_chr1_34171907_34224131	1/1	a0001	598	183	18	35	99	6	23	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0002	598	54	20	11	18	2	3	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0003	598	51	8	12	17	6	8	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0004	598	27	25	2	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0005	598	14	8	0	5	0	1	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0006	598	8	8	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0007	598	3	3	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0008	598	2	1	0	1	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0009	598	1	0	0	1	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0010	598	1	0	1	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0011	598	1	1	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0012	598	1	0	1	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0013	598	1	0	0	1	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0014	598	1	1	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0015	598	1	1	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0016	598	1	0	0	0	0	1	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0017	598	1	1	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0018	598	1	0	0	0	0	1	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0019	598	1	0	0	1	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0020	598	1	0	0	1	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0021	598	1	1	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	a0022	598	1	0	0	0	0	1	copy fasta	C1orf94	chr1	34171907	34224131
C20orf141_chr20_2809987_2820830	1/0	a0001	165	409	97	71	184	12	44	copy fasta	C20orf141	chr20	2809987	2820830
C20orf141_chr20_2809987_2820830	0/1	a0002	165	3	0	2	0	0	0	copy fasta	C20orf141	chr20	2809987	2820830
C20orf141_chr20_2809987_2820830	0/0	a0003	165	1	1	0	0	0	0	copy fasta	C20orf141	chr20	2809987	2820830
C20orf141_chr20_2809987_2820830	0/0	a0004	165	1	0	1	0	0	0	copy fasta	C20orf141	chr20	2809987	2820830
C20orf144_chr20_33657327_33668908	1/1	a0001	153	323	56	53	154	16	42	copy fasta	C20orf144	chr20	33657327	33668908
C20orf144_chr20_33657327_33668908	0/0	a0002	153	49	29	10	8	0	2	copy fasta	C20orf144	chr20	33657327	33668908
C20orf144_chr20_33657327_33668908	0/0	a0003	148	13	12	1	0	0	0	copy fasta	C20orf144	chr20	33657327	33668908
C20orf144_chr20_33657327_33668908	0/0	a0004	153	1	1	0	0	0	0	copy fasta	C20orf144	chr20	33657327	33668908
C20orf173_chr20_35521979_35534652	1/1	a0001	202	277	53	46	127	15	34	copy fasta	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	a0002	202	74	28	17	18	3	8	copy fasta	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	a0003	202	10	8	2	0	0	0	copy fasta	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	a0004	202	2	2	0	0	0	0	copy fasta	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	a0005	202	1	1	0	0	0	0	copy fasta	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	a0006	202	1	0	1	0	0	0	copy fasta	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	a0007	202	1	0	0	1	0	0	copy fasta	C20orf173	chr20	35521979	35534652
C20orf202_chr20_1198454_1214076	1/1	a0001	99	413	97	76	182	16	40	copy fasta	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	a0002	99	2	1	1	0	0	0	copy fasta	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	a0003	99	1	0	1	0	0	0	copy fasta	C20orf202	chr20	1198454	1214076