JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C20orf203_chr20_32626625_32678941	1/1	a0001	194	355	85	68	141	12	47	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/0	a0002	194	3	3	0	0	0	0	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/0	a0003	194	1	0	0	1	0	0	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/0	a0004	194	1	0	0	0	0	1	copy fasta	C20orf203	chr20	32626625	32678941
C20orf204_chr20_64031182_64044001	1/1	a0001	189	386	94	71	157	16	46	copy fasta	C20orf204	chr20	64031182	64044001
C20orf204_chr20_64031182_64044001	0/0	a0002	189	5	0	0	5	0	0	copy fasta	C20orf204	chr20	64031182	64044001
C20orf204_chr20_64031182_64044001	0/0	a0003	58	1	0	1	0	0	0	copy fasta	C20orf204	chr20	64031182	64044001
C20orf85_chr20_58145902_58166150	1/1	a0001	137	296	90	52	105	16	31	copy fasta	C20orf85	chr20	58145902	58166150
C20orf85_chr20_58145902_58166150	0/0	a0002	137	27	5	13	7	0	2	copy fasta	C20orf85	chr20	58145902	58166150
C20orf85_chr20_58145902_58166150	0/0	a0003	137	3	2	1	0	0	0	copy fasta	C20orf85	chr20	58145902	58166150
C20orf85_chr20_58145902_58166150	0/0	a0004	137	2	1	1	0	0	0	copy fasta	C20orf85	chr20	58145902	58166150
C20orf85_chr20_58145902_58166150	0/0	a0005	137	1	0	1	0	0	0	copy fasta	C20orf85	chr20	58145902	58166150
C20orf85_chr20_58145902_58166150	0/0	a0006	137	1	0	0	0	0	1	copy fasta	C20orf85	chr20	58145902	58166150
C20orf96_chr20_265863_295750	0/0	a0001	363	258	66	43	123	7	19	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	1/1	a0002	363	151	28	39	52	9	21	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	a0003	363	1	0	0	1	0	0	copy fasta	C20orf96	chr20	265863	295750
C21orf58_chr21_46296130_46328870	1/1	a0001	322	262	77	43	95	13	32	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	a0002	323	97	12	28	40	5	12	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	a0003	323	3	3	0	0	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	a0004	322	3	0	0	0	0	3	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	a0005	322	3	0	0	3	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	a0006	323	2	0	0	1	0	1	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	a0007	322	2	0	0	2	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	a0008	322	2	2	0	0	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	a0009	322	1	0	1	0	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	a0010	322	1	0	0	1	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	a0011	323	1	0	0	1	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	a0012	322	1	0	0	1	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf62_chr21_32785673_32818703	0/1	a0001	219	300	91	64	101	8	35	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	a0002	219	1	0	0	0	0	1	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	a0003	219	1	1	0	0	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	a0004	219	1	0	0	1	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf91_chr21_17783974_17824356	1/0	a0001	297	187	71	33	58	3	21	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/1	a0002	297	126	19	21	66	7	12	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	a0003	297	96	1	20	57	4	14	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	a0004	297	3	3	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	a0005	297	1	0	0	1	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	a0006	297	1	0	0	0	0	1	copy fasta	C21orf91	chr21	17783974	17824356
C22orf15_chr22_23757990_23770863	1/1	a0001	148	428	94	80	190	15	47	copy fasta	C22orf15	chr22	23757990	23770863
C22orf15_chr22_23757990_23770863	0/0	a0002	148	2	2	0	0	0	0	copy fasta	C22orf15	chr22	23757990	23770863
C22orf15_chr22_23757990_23770863	0/0	a0003	148	1	0	0	0	0	1	copy fasta	C22orf15	chr22	23757990	23770863
C22orf15_chr22_23757990_23770863	0/0	a0004	148	1	0	0	0	1	0	copy fasta	C22orf15	chr22	23757990	23770863
C22orf23_chr22_37938050_37958601	1/1	a0001	217	347	63	77	154	17	34	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	a0002	217	18	18	0	0	0	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	a0003	217	5	4	0	0	1	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	a0004	217	2	2	0	0	0	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	a0005	217	1	1	0	0	0	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	a0006	217	1	0	1	0	0	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf31_chr22_29053672_29066831	1/1	a0001	290	380	74	68	182	13	41	copy fasta	C22orf31	chr22	29053672	29066831
C22orf31_chr22_29053672_29066831	0/0	a0002	290	89	21	12	48	3	5	copy fasta	C22orf31	chr22	29053672	29066831