JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C22orf31_chr22_29053672_29066831	0/0	a0003	1	1	1	0	0	0	0	copy fasta	C22orf31	chr22	29053672	29066831
C22orf31_chr22_29053672_29066831	0/0	a0004	290	1	0	0	1	0	0	copy fasta	C22orf31	chr22	29053672	29066831
C22orf31_chr22_29053672_29066831	0/0	a0005	290	1	0	0	1	0	0	copy fasta	C22orf31	chr22	29053672	29066831
C22orf39_chr22_19435886_19452711	1/1	a0001	105	418	89	72	205	10	40	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	a0002	105	1	1	0	0	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	a0003	105	1	0	0	1	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf42_chr22_32144006_32164303	1/0	a0001	251	179	11	44	99	7	17	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	a0002	251	178	54	32	66	6	20	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/1	a0003	251	18	14	1	1	0	1	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	a0004	251	11	1	1	3	1	5	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	a0005	251	4	3	0	0	0	1	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	a0006	251	2	2	0	0	0	0	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	a0007	251	2	0	0	0	0	2	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	a0008	251	1	1	0	0	0	0	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	a0009	251	1	0	0	1	0	0	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	a0010	251	1	0	0	1	0	0	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	a0011	251	1	0	0	1	0	0	copy fasta	C22orf42	chr22	32144006	32164303
C2CD2L_chr11_119102344_119123544	1/1	a0001	706	328	86	60	141	13	26	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	a0002	706	59	0	5	37	1	16	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	a0003	706	3	3	0	0	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	a0004	706	2	0	0	2	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	a0005	706	1	0	0	1	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	a0006	706	1	0	1	0	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	a0007	706	1	0	0	1	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	a0008	706	1	1	0	0	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	a0009	706	1	0	0	1	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	a0010	706	1	0	0	1	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2_chr21_41880112_41959018	1/1	a0001	696	343	73	64	149	18	37	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	a0002	696	23	13	6	0	0	4	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	a0003	696	21	10	2	8	0	1	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	a0004	696	3	0	3	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	a0005	696	2	0	0	2	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	a0006	696	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	a0007	696	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	a0008	696	1	0	1	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	a0009	696	1	0	0	1	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD3_chr11_74007718_74176002	1/1	a0001	2353	78	5	15	41	4	11	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0002	2353	69	16	18	23	6	6	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0003	2353	60	4	5	41	3	7	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0004	2353	20	19	1	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0005	2353	13	7	3	0	0	3	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0006	2353	12	12	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0007	2353	10	9	0	0	0	1	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0008	2353	8	0	1	5	0	2	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0009	2353	6	1	0	4	0	1	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0010	2353	6	0	0	6	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0011	2353	5	5	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0012	2353	3	3	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0013	2353	3	0	1	0	0	2	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0014	2353	2	2	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002