JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C2CD3_chr11_74007718_74176002	0/0	a0015	1123	2	2	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0016	2353	1	0	0	1	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0017	2353	1	0	1	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0018	2353	1	0	1	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0019	2353	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0020	2353	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0021	2353	1	0	1	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0022	2353	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0023	2353	1	0	0	1	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0024	2353	1	0	0	0	0	1	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0025	2353	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0026	2353	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0027	2353	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0028	2353	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0029	2353	1	0	1	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0030	2353	1	0	0	1	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0031	2353	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0032	2353	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0033	2353	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0034	2353	1	0	0	0	1	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0035	2353	1	0	0	1	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	a0036	2353	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD4A_chr15_62061977_62075917	1/1	a0001	369	387	79	71	185	18	32	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	a0002	369	7	3	3	0	0	1	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	a0003	369	6	0	0	6	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	a0004	369	6	6	0	0	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	a0005	369	2	2	0	0	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	a0006	369	1	0	0	0	0	1	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	a0007	369	1	0	0	1	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4B_chr15_62158535_62170285	0/0	a0001	364	249	50	46	118	11	24	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	1/0	a0002	364	119	15	15	76	1	11	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/1	a0003	364	50	31	10	0	1	7	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	a0004	364	5	1	1	0	0	3	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	a0005	364	3	0	0	3	0	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	a0006	364	1	0	0	1	0	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	a0007	364	1	0	0	1	0	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	a0008	364	1	1	0	0	0	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	a0009	364	1	0	0	1	0	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	a0010	364	1	0	0	0	0	1	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	a0011	364	1	0	0	0	1	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4C_chr19_400445_414147	0/0	a0000	0	12	1	8	3	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	1/1	a0001	421	295	74	54	119	8	38	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	a0002	26	8	2	2	4	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	a0003	421	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	a0004	421	1	0	1	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	a0005	421	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	a0006	421	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	a0007	421	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	a0008	421	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	a0009	421	1	0	1	0	0	0	copy fasta	C2CD4C	chr19	400445	414147