JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C2CD4D_chr1_151832818_151844820	1/1	a0001	353	427	91	84	185	18	47	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	a0002	353	6	0	0	6	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	a0003	353	3	3	0	0	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	a0004	353	1	1	0	0	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	a0005	353	1	1	0	0	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	a0006	353	1	0	0	1	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	a0007	353	1	0	0	1	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	a0008	353	1	0	0	1	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	a0009	353	1	0	0	0	0	1	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD5_chr12_22443583_22549542	1/1	a0001	1051	199	88	40	37	6	26	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	a0002	1051	1	0	0	1	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD6_chr2_201482421_201624178	0/1	a0001	1820	113	14	18	62	4	14	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0002	1820	89	26	24	24	4	11	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0003	1820	11	7	3	0	1	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0004	1820	11	11	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0005	1820	5	4	1	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0006	1820	4	4	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0007	1820	3	2	1	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0008	1820	2	2	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	1/0	a0009	1820	2	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0010	1820	2	1	1	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0011	1778	2	0	2	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0012	1820	2	0	0	2	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0013	1820	2	2	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0014	1820	1	0	0	0	1	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0015	1820	1	0	0	1	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0016	1820	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0017	1820	1	0	1	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0018	1820	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0019	1820	1	0	0	1	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0020	1820	1	0	0	1	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0021	1820	1	0	0	0	0	1	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0022	1820	1	0	1	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0023	1309	1	0	0	1	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0024	1820	1	0	0	0	0	1	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0025	1820	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0026	1820	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0027	1820	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0028	1820	1	0	0	0	0	1	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0029	1820	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0030	1820	1	0	0	1	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0031	1820	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0032	1820	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0033	1820	1	0	0	1	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0034	1820	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	a0035	1820	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2_chr6_31922717_31950672	0/1	a0001	752	370	89	73	155	17	35	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	a0002	752	14	0	4	8	0	2	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	a0003	752	2	0	0	2	0	0	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	a0004	283	2	0	1	0	1	0	copy fasta	C2	chr6	31922717	31950672