JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C2_chr6_31922717_31950672	0/0	a0005	752	1	0	0	1	0	0	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	a0006	752	1	1	0	0	0	0	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	a0007	752	1	0	0	0	0	1	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	a0008	752	1	1	0	0	0	0	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	a0009	752	1	0	0	1	0	0	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	a0010	752	1	1	0	0	0	0	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	a0011	752	1	0	0	1	0	0	copy fasta	C2	chr6	31922717	31950672
C2orf15_chr2_99136707_99156669	1/1	a0001	91	410	94	77	179	14	44	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	a0002	91	4	0	3	1	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf16_chr2_27532386_27587722	0/0	a0001	5388	81	3	19	51	3	5	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0002	5388	80	10	10	44	4	12	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	1/1	a0003	5388	60	8	15	13	7	15	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0004	5388	10	0	0	10	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0005	5388	9	8	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0006	5388	9	6	3	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0007	5388	7	6	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0008	5388	6	5	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0009	5388	4	0	0	4	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0010	5388	4	0	0	4	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0011	5388	4	0	0	3	0	1	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0012	5388	3	0	0	3	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0013	5388	3	3	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0014	5388	3	3	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0015	5388	3	3	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0016	5388	2	0	0	0	2	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0017	5388	2	2	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0018	5388	2	0	0	2	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0019	5380	2	2	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0020	5388	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0021	5388	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0022	5388	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0023	5388	1	0	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0024	5388	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0025	5388	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0026	5388	1	0	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0027	5388	1	0	0	0	0	1	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0028	5388	1	0	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0029	5388	1	0	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0030	5388	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0031	5388	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0032	5388	1	0	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0033	4546	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0034	5388	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0035	5388	1	0	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0036	5388	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0037	5388	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0038	5388	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0039	5388	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0040	5388	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0041	5388	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722