JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C2orf16_chr2_27532386_27587722	0/0	a0042	5388	1	0	0	0	0	1	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0043	5396	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0044	5380	1	0	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0045	5388	1	0	0	0	0	1	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0046	5388	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0047	5388	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0048	5388	1	0	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0049	5388	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0050	5388	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	a0051	5388	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf42_chr2_70144885_70196019	1/1	a0001	574	293	94	43	121	6	27	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	a0002	574	35	0	18	14	0	3	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	a0003	438	14	1	4	9	0	0	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	a0004	574	1	0	1	0	0	0	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	a0005	438	1	0	0	1	0	0	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	a0006	574	1	0	0	1	0	0	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	a0007	574	1	1	0	0	0	0	copy fasta	C2orf42	chr2	70144885	70196019
C2orf49_chr2_105332540_105354211	1/1	a0001	232	393	84	63	190	13	41	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	a0002	232	14	5	6	0	2	1	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	a0003	232	3	3	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	a0004	232	2	0	1	0	1	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	a0005	232	2	0	0	0	0	2	copy fasta	C2orf49	chr2	105332540	105354211
C2orf50_chr2_11128128_11156317	1/1	a0001	162	371	83	76	154	12	44	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	a0002	162	3	3	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	a0003	162	3	3	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	a0004	162	2	0	0	2	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	a0005	162	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf66_chr2_196799417_196814355	1/1	a0001	100	306	90	72	100	8	34	copy fasta	C2orf66	chr2	196799417	196814355
C2orf68_chr2_85600254_85617066	1/1	a0001	166	373	83	72	170	10	36	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	a0002	166	3	3	0	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf69_chr2_199906293_199933273	1/1	a0001	385	370	67	63	201	10	27	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	a0002	385	18	7	7	0	0	4	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	a0003	385	16	0	1	13	0	2	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	a0004	385	3	3	0	0	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	a0005	1	1	0	1	0	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	a0006	385	1	0	0	1	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	a0007	385	1	1	0	0	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	a0008	385	1	0	0	1	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	a0009	385	1	0	0	0	0	1	copy fasta	C2orf69	chr2	199906293	199933273
C2orf72_chr2_231032523_231054719	1/1	a0001	295	284	60	51	136	10	25	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	a0002	295	157	39	20	71	6	21	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	a0003	295	15	0	1	12	0	2	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	a0004	295	1	0	0	1	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	a0005	295	1	1	0	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	a0006	295	1	0	0	1	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	a0007	295	1	0	0	1	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf73_chr2_54325884_54366581	0/0	a0001	287	147	19	22	94	2	10	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	1/0	a0002	287	120	28	17	55	6	13	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/1	a0003	287	72	23	12	25	4	7	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	a0004	287	53	14	19	2	6	12	copy fasta	C2orf73	chr2	54325884	54366581