JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C2orf73_chr2_54325884_54366581	0/0	a0005	287	8	0	0	8	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	a0006	287	6	0	0	6	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	a0007	287	2	2	0	0	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	a0008	287	2	1	1	0	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	a0009	287	1	0	0	1	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	a0010	287	1	1	0	0	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	a0011	287	1	0	1	0	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	a0012	287	1	0	0	1	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf74_chr2_61157188_61169828	0/0	a0000	0	1	1	0	0	0	0	copy fasta	C2orf74	chr2	61157188	61169828
C2orf74_chr2_61157188_61169828	1/0	a0001	187	260	47	51	121	8	32	copy fasta	C2orf74	chr2	61157188	61169828
C2orf74_chr2_61157188_61169828	0/1	a0002	187	153	40	33	61	6	12	copy fasta	C2orf74	chr2	61157188	61169828
C2orf74_chr2_61157188_61169828	0/0	a0003	187	5	5	0	0	0	0	copy fasta	C2orf74	chr2	61157188	61169828
C2orf74_chr2_61157188_61169828	0/0	a0004	187	1	1	0	0	0	0	copy fasta	C2orf74	chr2	61157188	61169828
C2orf74_chr2_61157188_61169828	0/0	a0005	187	1	1	0	0	0	0	copy fasta	C2orf74	chr2	61157188	61169828
C2orf74_chr2_61157188_61169828	0/0	a0006	187	1	1	0	0	0	0	copy fasta	C2orf74	chr2	61157188	61169828
C2orf76_chr2_119297225_119371834	0/1	a0001	126	229	71	40	84	7	26	copy fasta	C2orf76	chr2	119297225	119371834
C2orf76_chr2_119297225_119371834	1/0	a0002	126	109	7	28	59	4	10	copy fasta	C2orf76	chr2	119297225	119371834
C2orf76_chr2_119297225_119371834	0/0	a0003	126	9	5	2	0	1	1	copy fasta	C2orf76	chr2	119297225	119371834
C2orf76_chr2_119297225_119371834	0/0	a0004	126	4	4	0	0	0	0	copy fasta	C2orf76	chr2	119297225	119371834
C2orf76_chr2_119297225_119371834	0/0	a0005	126	2	0	0	1	0	1	copy fasta	C2orf76	chr2	119297225	119371834
C2orf76_chr2_119297225_119371834	0/0	a0006	126	1	1	0	0	0	0	copy fasta	C2orf76	chr2	119297225	119371834
C2orf78_chr2_73779183_73822148	1/1	a0001	922	190	65	31	58	8	26	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	a0002	922	7	6	1	0	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	a0003	4	6	5	1	0	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	a0004	922	2	2	0	0	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	a0005	922	2	2	0	0	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	a0006	922	1	0	0	1	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	a0007	922	1	0	1	0	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	a0008	922	1	1	0	0	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	a0009	922	1	0	0	1	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	a0010	922	1	1	0	0	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf80_chr2_208160347_208195030	0/1	a0001	193	283	79	63	89	15	36	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	a0002	193	47	13	5	18	3	8	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	a0003	193	5	0	0	5	0	0	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	a0004	57	2	0	0	2	0	0	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	a0005	193	2	2	0	0	0	0	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	1/0	a0006	193	2	1	0	0	0	0	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	a0007	193	1	1	0	0	0	0	copy fasta	C2orf80	chr2	208160347	208195030
C2orf81_chr2_74409177_74426619	1/1	a0001	615	280	50	55	132	12	29	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	a0002	623	102	37	10	54	0	1	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	a0003	615	8	8	0	0	0	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	a0004	615	3	0	0	0	0	3	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	a0005	278	1	0	0	1	0	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	a0006	631	1	0	0	1	0	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	a0007	623	1	1	0	0	0	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	a0008	615	1	0	0	1	0	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	a0009	610	1	0	0	0	0	1	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	a0010	615	1	0	1	0	0	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	a0011	615	1	0	0	1	0	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	a0012	615	1	1	0	0	0	0	copy fasta	C2orf81	chr2	74409177	74426619