JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C3orf20_chr3_14670141_14778036	0/0	a0005	904	25	4	6	9	0	6	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0006	904	20	0	6	12	0	2	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0007	904	4	0	0	4	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0008	904	4	0	2	0	0	2	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0009	904	3	1	0	2	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0010	904	3	3	0	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0011	904	2	0	0	1	0	1	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0012	904	2	2	0	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0013	904	1	0	0	1	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0014	904	1	0	0	1	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0015	904	1	0	0	0	0	1	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0016	311	1	0	0	0	1	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0017	904	1	0	0	1	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0018	904	1	0	0	0	0	1	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0019	904	1	1	0	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0020	904	1	1	0	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0021	904	1	0	0	1	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0022	904	1	0	0	1	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0023	904	1	0	1	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0024	904	1	1	0	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0025	904	1	0	0	1	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0026	904	1	0	1	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	a0027	904	1	0	0	1	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf22_chr3_126544692_126563932	1/1	a0001	141	408	98	78	172	16	42	copy fasta	C3orf22	chr3	126544692	126563932
C3orf33_chr3_155757617_155811278	0/1	a0001	294	294	39	62	148	9	35	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	1/0	a0002	294	54	16	14	14	5	4	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	a0003	294	30	16	1	10	0	3	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	a0004	294	11	11	0	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	a0005	294	10	9	1	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	a0006	294	4	4	0	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	a0007	294	1	0	1	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	a0008	294	1	0	1	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	a0009	294	1	1	0	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf38_chr3_88144959_88162965	1/1	a0001	329	317	84	50	144	10	27	copy fasta	C3orf38	chr3	88144959	88162965
C3orf38_chr3_88144959_88162965	0/0	a0002	329	1	1	0	0	0	0	copy fasta	C3orf38	chr3	88144959	88162965
C3orf38_chr3_88144959_88162965	0/0	a0003	329	1	0	0	0	0	1	copy fasta	C3orf38	chr3	88144959	88162965
C3orf38_chr3_88144959_88162965	0/0	a0004	329	1	1	0	0	0	0	copy fasta	C3orf38	chr3	88144959	88162965
C3orf49_chr3_63814299_63853636	1/1	a0001	292	296	82	50	117	11	34	copy fasta	C3orf49	chr3	63814299	63853636
C3orf49_chr3_63814299_63853636	0/0	a0002	292	61	4	14	34	3	6	copy fasta	C3orf49	chr3	63814299	63853636
C3orf49_chr3_63814299_63853636	0/0	a0003	221	20	0	0	20	0	0	copy fasta	C3orf49	chr3	63814299	63853636
C3orf49_chr3_63814299_63853636	0/0	a0004	22	8	6	0	0	0	2	copy fasta	C3orf49	chr3	63814299	63853636
C3orf49_chr3_63814299_63853636	0/0	a0005	292	2	0	0	2	0	0	copy fasta	C3orf49	chr3	63814299	63853636
C3orf49_chr3_63814299_63853636	0/0	a0006	164	1	0	0	1	0	0	copy fasta	C3orf49	chr3	63814299	63853636
C3orf52_chr3_112081389_112123210	0/1	a0001	217	317	59	60	137	15	45	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	0/0	a0002	217	36	20	2	10	1	3	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	1/0	a0003	217	10	9	0	0	0	0	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	0/0	a0004	217	3	2	1	0	0	0	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	0/0	a0005	217	2	1	1	0	0	0	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	0/0	a0006	217	1	1	0	0	0	0	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	0/0	a0007	217	1	0	0	1	0	0	copy fasta	C3orf52	chr3	112081389	112123210