JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C3orf52_chr3_112081389_112123210	0/0	a0008	217	1	0	1	0	0	0	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	0/0	a0009	217	1	0	1	0	0	0	copy fasta	C3orf52	chr3	112081389	112123210
C3orf62_chr3_49263596_49282232	1/1	a0001	267	270	77	68	81	13	29	copy fasta	C3orf62	chr3	49263596	49282232
C3orf62_chr3_49263596_49282232	0/0	a0002	267	35	5	7	17	3	3	copy fasta	C3orf62	chr3	49263596	49282232
C3orf62_chr3_49263596_49282232	0/0	a0003	267	12	12	0	0	0	0	copy fasta	C3orf62	chr3	49263596	49282232
C3orf62_chr3_49263596_49282232	0/0	a0004	267	5	1	0	0	0	4	copy fasta	C3orf62	chr3	49263596	49282232
C3orf62_chr3_49263596_49282232	0/0	a0005	267	2	0	0	2	0	0	copy fasta	C3orf62	chr3	49263596	49282232
C3orf62_chr3_49263596_49282232	0/0	a0006	267	1	0	1	0	0	0	copy fasta	C3orf62	chr3	49263596	49282232
C3orf62_chr3_49263596_49282232	0/0	a0007	267	1	1	0	0	0	0	copy fasta	C3orf62	chr3	49263596	49282232
C3orf70_chr3_185071838_185158060	1/1	a0001	250	363	74	67	170	9	41	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	a0002	250	21	4	6	10	1	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	a0003	250	3	2	1	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	a0004	250	1	0	0	0	0	1	copy fasta	C3orf70	chr3	185071838	185158060
C3orf80_chr3_160220422_160233213	1/1	a0001	247	407	100	75	172	15	43	copy fasta	C3orf80	chr3	160220422	160233213
C3orf80_chr3_160220422_160233213	0/0	a0002	247	3	0	1	0	1	1	copy fasta	C3orf80	chr3	160220422	160233213
C3orf84_chr3_49172634_49196858	1/1	a0001	204	304	86	64	93	14	45	copy fasta	C3orf84	chr3	49172634	49196858
C3orf84_chr3_49172634_49196858	0/0	a0002	166	1	0	0	0	0	1	copy fasta	C3orf84	chr3	49172634	49196858
C3orf84_chr3_49172634_49196858	0/0	a0003	204	1	0	0	1	0	0	copy fasta	C3orf84	chr3	49172634	49196858
C3orf85_chr3_109131719_109156401	1/1	a0001	90	367	100	80	131	14	40	copy fasta	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	a0002	90	2	0	2	0	0	0	copy fasta	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	a0003	90	1	0	0	1	0	0	copy fasta	C3orf85	chr3	109131719	109156401
C4A_chr6_31977057_32007681	0/0	a0001	1744	156	37	31	68	3	17	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0002	1744	28	2	1	22	0	3	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0003	1744	28	0	9	17	1	1	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0004	1744	21	1	2	16	0	2	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0005	1744	20	8	6	3	2	1	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0006	1744	15	4	3	6	1	1	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0007	1744	7	0	0	1	1	5	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0008	1744	5	5	0	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0009	1744	4	4	0	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0010	1744	4	3	0	0	1	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0011	1744	4	1	2	0	0	1	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0012	1744	3	0	0	3	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0013	1744	2	0	0	2	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0014	1744	2	0	0	2	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0015	1744	2	1	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0016	1744	2	2	0	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0017	1744	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0018	1744	1	0	1	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0019	1744	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0020	1744	1	0	0	0	1	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0021	1744	1	1	0	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0022	1744	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0023	1744	1	1	0	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0024	1744	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0025	1744	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0026	1744	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0027	1744	1	0	0	0	0	1	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0028	1744	1	1	0	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0029	1744	1	0	0	0	1	0	copy fasta	C4A	chr6	31977057	32007681