JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C4A_chr6_31977057_32007681	0/0	a0030	1744	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0031	1744	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0032	1744	1	0	0	0	1	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0033	1744	1	1	0	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0034	1744	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	a0035	1744	1	0	1	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4BPA_chr1_207099233_207149972	0/1	a0001	597	167	68	32	44	5	17	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	1/0	a0002	597	141	8	34	64	11	23	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	a0003	597	7	7	0	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	a0004	597	7	0	5	2	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	a0005	597	5	4	1	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	a0006	597	5	0	3	0	0	2	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	a0007	597	2	2	0	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	a0008	597	2	1	1	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	a0009	597	1	1	0	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	a0010	597	1	1	0	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	a0011	597	1	0	0	1	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	a0012	597	1	0	0	1	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	a0013	597	1	1	0	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	a0014	597	1	1	0	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPB_chr1_207083860_207104993	1/1	a0001	252	384	97	79	146	18	42	copy fasta	C4BPB	chr1	207083860	207104993
C4BPB_chr1_207083860_207104993	0/0	a0002	252	2	0	0	0	0	2	copy fasta	C4BPB	chr1	207083860	207104993
C4BPB_chr1_207083860_207104993	0/0	a0003	252	1	0	1	0	0	0	copy fasta	C4BPB	chr1	207083860	207104993
C4BPB_chr1_207083860_207104993	0/0	a0004	252	1	1	0	0	0	0	copy fasta	C4BPB	chr1	207083860	207104993
C4B_chr6_32009795_32040418	0/0	a0001	1744	76	26	16	25	3	6	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0002	1744	67	1	19	38	3	6	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0003	1744	65	6	16	38	2	3	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0004	1744	29	12	1	3	2	11	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0005	1744	13	2	2	5	2	2	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0006	1744	13	0	0	13	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0007	1744	10	8	2	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0008	1744	9	0	0	9	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0009	1744	5	0	3	1	0	1	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0010	1744	5	5	0	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0011	1744	5	1	1	3	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0012	1744	4	1	0	2	0	1	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0013	1744	3	3	0	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0014	1744	3	1	0	2	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0015	1744	2	0	1	0	1	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0016	1744	2	0	0	1	0	1	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0017	1744	2	0	0	0	0	2	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0018	1744	2	0	0	2	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0019	1744	1	1	0	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0020	1744	1	1	0	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0021	1744	1	1	0	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0022	1744	1	0	0	0	1	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0023	1744	1	1	0	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0024	1744	1	0	1	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0025	1744	1	0	0	1	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0026	1744	1	0	1	0	0	0	copy fasta	C4B	chr6	32009795	32040418