JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C4B_chr6_32009795_32040418	0/0	a0027	1744	1	0	0	0	1	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0028	1744	1	0	0	1	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0029	1744	1	0	0	1	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0030	1744	1	1	0	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0031	1744	1	0	0	0	0	1	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0032	1744	1	0	0	0	1	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0033	1744	1	0	1	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0034	1744	1	0	0	1	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0035	1744	1	1	0	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0036	1744	1	0	0	1	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	a0037	1744	1	0	0	1	0	0	copy fasta	C4B	chr6	32009795	32040418
C4orf17_chr4_99506021_99547303	1/1	a0001	359	177	9	46	106	5	9	copy fasta	C4orf17	chr4	99506021	99547303
C4orf17_chr4_99506021_99547303	0/0	a0002	359	86	37	8	33	0	8	copy fasta	C4orf17	chr4	99506021	99547303
C4orf17_chr4_99506021_99547303	0/0	a0003	359	75	22	12	25	1	15	copy fasta	C4orf17	chr4	99506021	99547303
C4orf17_chr4_99506021_99547303	0/0	a0004	359	29	11	5	8	0	5	copy fasta	C4orf17	chr4	99506021	99547303
C4orf17_chr4_99506021_99547303	0/0	a0005	355	18	17	1	0	0	0	copy fasta	C4orf17	chr4	99506021	99547303
C4orf17_chr4_99506021_99547303	0/0	a0006	359	1	0	0	0	0	1	copy fasta	C4orf17	chr4	99506021	99547303
C4orf19_chr4_37448925_37598510	1/0	a0001	314	299	83	68	107	9	31	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/1	a0002	314	47	6	13	16	5	6	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	a0003	314	5	0	0	5	0	0	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	a0004	314	1	0	1	0	0	0	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	a0005	314	1	1	0	0	0	0	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	a0006	314	1	0	0	0	0	1	copy fasta	C4orf19	chr4	37448925	37598510
C4orf33_chr4_129091152_129121637	0/0	a0001	199	229	24	53	123	5	24	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	1/0	a0002	199	95	32	14	42	2	4	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/1	a0003	199	29	3	3	11	7	4	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	a0004	199	24	9	1	10	1	3	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	a0005	143	9	9	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	a0006	199	3	1	2	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	a0007	199	3	0	2	0	1	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	a0008	199	2	0	0	2	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	a0009	199	1	0	1	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	a0010	199	1	0	0	0	0	1	copy fasta	C4orf33	chr4	129091152	129121637
C4orf36_chr4_86871205_86897422	0/1	a0001	117	257	53	43	127	10	23	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	a0002	117	55	0	13	32	3	7	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	1/0	a0003	117	47	29	1	13	0	3	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	a0004	117	15	14	1	0	0	0	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	a0005	117	9	1	6	0	1	1	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	a0006	117	3	3	0	0	0	0	copy fasta	C4orf36	chr4	86871205	86897422
C4orf3_chr4_119291419_119305645	1/1	a0001	67	420	86	72	202	18	40	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	a0002	67	4	4	0	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf45_chr4_158888134_159040229	0/0	a0001	186	200	83	53	32	9	23	copy fasta	C4orf45	chr4	158888134	159040229
C4orf45_chr4_158888134_159040229	0/1	a0002	186	27	0	4	11	4	7	copy fasta	C4orf45	chr4	158888134	159040229
C4orf45_chr4_158888134_159040229	0/0	a0003	186	23	5	1	17	0	0	copy fasta	C4orf45	chr4	158888134	159040229
C4orf45_chr4_158888134_159040229	0/0	a0004	186	5	0	0	0	0	5	copy fasta	C4orf45	chr4	158888134	159040229
C4orf45_chr4_158888134_159040229	1/0	a0005	186	4	3	0	0	0	0	copy fasta	C4orf45	chr4	158888134	159040229
C4orf45_chr4_158888134_159040229	0/0	a0006	186	3	3	0	0	0	0	copy fasta	C4orf45	chr4	158888134	159040229
C4orf45_chr4_158888134_159040229	0/0	a0007	186	2	0	0	0	1	1	copy fasta	C4orf45	chr4	158888134	159040229
C4orf46_chr4_158661675_158676887	1/1	a0001	113	370	98	68	144	14	44	copy fasta	C4orf46	chr4	158661675	158676887
C4orf47_chr4_185421254_185454826	1/0	a0001	309	321	79	56	137	14	34	copy fasta	C4orf47	chr4	185421254	185454826