JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C4orf47_chr4_185421254_185454826	0/1	a0002	309	25	5	10	1	0	8	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	a0003	309	8	8	0	0	0	0	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	a0004	309	1	0	0	1	0	0	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	a0005	309	1	0	0	1	0	0	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	a0006	309	1	1	0	0	0	0	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	a0007	309	1	1	0	0	0	0	copy fasta	C4orf47	chr4	185421254	185454826
C4orf48_chr4_2036995_2048964	0/1	a0001	95	384	88	74	173	12	36	copy fasta	C4orf48	chr4	2036995	2048964
C4orf48_chr4_2036995_2048964	0/0	a0002	96	3	1	2	0	0	0	copy fasta	C4orf48	chr4	2036995	2048964
C4orf48_chr4_2036995_2048964	1/0	a0003	95	3	2	0	0	0	0	copy fasta	C4orf48	chr4	2036995	2048964
C4orf48_chr4_2036995_2048964	0/0	a0004	95	1	1	0	0	0	0	copy fasta	C4orf48	chr4	2036995	2048964
C4orf48_chr4_2036995_2048964	0/0	a0005	95	1	0	0	1	0	0	copy fasta	C4orf48	chr4	2036995	2048964
C4orf50_chr4_5954375_6023431	0/0	a0001	1508	67	4	8	48	0	7	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0002	1508	31	0	5	24	0	2	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	1/0	a0003	1508	26	0	14	6	3	2	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0004	1508	22	1	4	10	3	4	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0005	1508	10	4	0	4	0	2	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0006	1508	7	0	2	4	0	1	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0007	1508	7	0	0	7	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0008	1508	7	0	4	1	0	2	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0009	1508	6	6	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0010	1508	6	4	0	0	0	2	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0011	1508	5	0	0	0	0	5	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0012	1508	5	5	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/1	a0013	1508	5	1	0	1	0	2	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0014	1508	5	0	1	3	0	1	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0015	1508	4	3	1	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0016	1508	4	1	0	0	0	3	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0017	1508	4	4	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0018	1508	4	0	2	0	0	2	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0019	1508	4	0	2	0	1	1	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0020	1508	3	3	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0021	1508	3	2	1	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0022	1508	3	2	1	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0023	1508	3	0	1	0	2	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0024	1508	2	0	1	0	1	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0025	1508	2	0	0	0	1	1	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0026	1508	2	2	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0027	1508	2	0	1	0	0	1	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0028	1508	2	0	1	0	0	1	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0029	1508	2	0	0	0	2	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0030	1508	2	1	1	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0031	1508	2	2	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0032	1508	2	2	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0033	1508	2	2	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0034	1508	2	0	0	0	2	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0035	1508	2	0	0	0	0	2	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0036	1508	2	0	0	1	0	1	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0037	1508	2	0	2	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0038	1508	2	2	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0039	1508	2	2	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431