JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C4orf50_chr4_5954375_6023431	0/0	a0040	1508	2	0	2	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0041	1508	2	0	2	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0042	1508	2	0	0	2	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0043	1508	1	0	1	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0044	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0045	1508	1	0	1	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0046	1508	1	0	0	0	0	1	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0047	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0048	1508	1	0	1	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0049	1508	1	0	1	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0050	1508	1	0	1	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0051	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0052	1508	1	0	0	0	0	1	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0053	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0054	1508	1	0	0	0	0	1	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0055	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0056	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0057	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0058	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0059	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0060	1508	1	0	0	0	0	1	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0061	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0062	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0063	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0064	1508	1	0	1	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0065	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0066	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0067	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0068	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0069	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0070	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0071	1508	1	0	0	0	1	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0072	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0073	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0074	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0075	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0076	1508	1	0	1	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0077	1508	1	0	0	0	0	1	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0078	1508	1	0	0	0	0	1	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0079	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0080	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0081	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0082	1508	1	0	1	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0083	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0084	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0085	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0086	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0087	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0088	1508	1	0	0	1	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0089	1508	1	0	0	1	0	0	copy fasta	C4orf50	chr4	5954375	6023431