Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACE_chr17_63472061_63503373	0/0	a0014	1306	2	1	1	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0015	1306	1	0	1	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0016	1306	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0017	1306	1	0	0	0	1	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0018	1306	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0019	1306	1	0	0	0	0	1	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0020	1306	1	1	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0021	1306	1	0	0	0	0	1	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0022	1306	1	1	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0023	1306	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0024	1306	1	1	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0025	1306	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0026	1306	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	a0027	1306	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACHE_chr7_100884994_100900888	1/1	a0001	614	400	96	65	173	17	47	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	a0002	614	6	1	2	0	1	2	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	a0003	614	4	0	0	4	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	a0004	614	1	1	0	0	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	a0005	614	1	0	1	0	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	a0006	239	1	0	0	0	0	1	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	a0007	614	1	0	0	1	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACIN1_chr14_23053564_23100136	0/0	a0001	1283	133	22	27	63	3	18	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/1	a0002	1285	101	27	15	42	1	15	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	a0003	1284	38	1	7	29	1	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	a0004	1285	26	8	11	0	1	6	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	a0005	1285	19	19	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	a0006	1284	8	7	1	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	a0007	1284	8	0	0	7	0	1	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	a0008	1287	4	4	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	a0009	1284	3	3	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	a0010	1284	2	2	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	a0011	1282	1	0	0	1	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	a0012	1284	1	0	1	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	1/0	a0013	1283	1	0	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	a0014	1283	1	0	0	1	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	a0015	1283	1	0	0	1	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	a0016	1283	1	0	0	1	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	a0017	1287	1	1	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	a0018	1284	1	0	0	1	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACKR1_chr1_159199875_159211500	1/0	a0001	336	251	1	32	180	5	32	copy fasta	ACKR1	chr1	159199875	159211500
ACKR1_chr1_159199875_159211500	0/1	a0002	336	158	82	35	23	5	12	copy fasta	ACKR1	chr1	159199875	159211500
ACKR1_chr1_159199875_159211500	0/0	a0003	336	16	1	8	0	4	3	copy fasta	ACKR1	chr1	159199875	159211500
ACKR1_chr1_159199875_159211500	0/0	a0004	336	15	0	3	11	0	1	copy fasta	ACKR1	chr1	159199875	159211500
ACKR1_chr1_159199875_159211500	0/0	a0005	336	6	0	2	0	2	2	copy fasta	ACKR1	chr1	159199875	159211500
ACKR2_chr3_42804445_42872286	1/1	a0001	384	194	68	31	64	6	23	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	a0002	384	141	20	28	69	4	20	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	a0003	384	3	0	0	1	2	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	a0004	384	2	2	0	0	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	a0005	384	1	0	1	0	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	a0006	384	1	0	0	0	0	1	copy fasta	ACKR2	chr3	42804445	42872286