JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C4orf50_chr4_5954375_6023431	0/0	a0090	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0091	1508	1	0	0	0	0	1	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0092	1508	1	0	0	1	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0093	1508	1	0	0	1	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0094	1508	1	0	0	1	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0095	1508	1	0	0	1	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0096	1508	1	0	0	0	0	1	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0097	1508	1	0	0	1	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0098	1508	1	0	1	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0099	1508	1	0	1	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0100	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0101	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0102	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0103	1508	1	0	0	1	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0104	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0105	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0106	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0107	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0108	1508	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	a0109	1508	1	0	0	1	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf54_chr4_99631529_99662828	1/1	a0001	1793	123	20	29	56	4	12	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0002	1793	85	20	11	51	0	3	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0003	1793	75	2	2	67	0	4	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0004	1793	23	2	10	0	1	10	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0005	1793	22	17	2	0	0	3	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0006	1793	9	7	2	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0007	1793	8	7	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0008	1793	6	0	0	6	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0009	1793	4	4	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0010	1793	3	0	0	3	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0011	1793	3	0	3	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0012	1793	2	2	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0013	1793	2	2	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0014	1793	2	1	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0015	1793	2	0	2	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0016	1793	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0017	1793	1	0	0	1	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0018	1793	1	0	0	0	0	1	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0019	1793	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0020	1793	1	0	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0021	1793	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0022	1793	1	0	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0023	1793	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0024	1793	1	0	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0025	1793	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0026	305	1	0	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0027	1793	1	0	0	1	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0028	1793	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0029	1793	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0030	1793	1	0	0	1	0	0	copy fasta	C4orf54	chr4	99631529	99662828