JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C4orf54_chr4_99631529_99662828	0/0	a0031	1793	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0032	1793	1	0	0	0	0	1	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0033	1793	1	0	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0034	1793	1	0	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0035	1793	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0036	1793	1	0	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0037	1793	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	a0038	1793	1	0	0	0	1	0	copy fasta	C4orf54	chr4	99631529	99662828
C5AR1_chr19_47304861_47327066	0/1	a0001	350	366	86	75	151	12	41	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	1/0	a0002	350	9	6	1	0	0	1	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	a0003	350	1	0	0	1	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR2_chr19_47327175_47352329	1/1	a0001	337	398	86	77	174	14	45	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	a0002	337	3	2	1	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	a0003	337	3	3	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	a0004	337	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	a0005	337	1	0	0	0	0	1	copy fasta	C5AR2	chr19	47327175	47352329
C5_chr9_120947335_121055275	1/0	a0001	1676	98	31	19	33	6	8	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	a0002	1676	70	3	19	36	4	8	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/1	a0003	1676	56	20	5	30	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	a0004	1676	10	9	1	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	a0005	1676	7	0	0	7	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	a0006	1676	6	6	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	a0007	1676	4	4	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	a0008	1676	4	0	4	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	a0009	1676	3	3	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	a0010	1676	3	3	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	a0011	1676	3	0	0	3	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	a0012	1676	3	3	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	a0013	1676	2	2	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	a0014	1676	2	0	0	2	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	a0015	1676	1	0	0	1	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	a0016	1676	1	0	0	1	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	a0017	1676	1	1	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	a0018	1676	1	1	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	a0019	1676	1	0	0	1	0	0	copy fasta	C5	chr9	120947335	121055275
C5orf15_chr5_133950510_133973625	1/1	a0001	265	427	89	78	202	16	40	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	a0002	265	7	5	2	0	0	0	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	a0003	265	1	1	0	0	0	0	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	a0004	265	1	1	0	0	0	0	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	a0005	265	1	0	0	0	0	1	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	a0006	265	1	0	0	0	0	1	copy fasta	C5orf15	chr5	133950510	133973625
C5orf22_chr5_31527301_31560053	1/1	a0001	442	317	66	47	164	12	26	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	a0002	442	59	7	13	26	2	11	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	a0003	442	20	14	4	0	0	2	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	a0004	442	5	5	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	a0005	442	1	0	0	0	0	1	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	a0006	442	1	1	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	a0007	442	1	1	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf24_chr5_134840968_134864735	1/1	a0001	188	398	90	62	184	14	46	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	a0002	188	2	2	0	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735