JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C5orf24_chr5_134840968_134864735	0/0	a0003	188	1	0	0	1	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	a0004	182	1	0	0	1	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf34_chr5_43481709_43520148	1/1	a0001	638	325	70	63	134	14	42	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	a0002	638	8	7	1	0	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	a0003	638	4	4	0	0	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	a0004	638	3	3	0	0	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf46_chr5_147887722_147911538	0/0	a0001	87	197	20	36	106	8	27	copy fasta	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	a0002	87	147	63	14	57	2	11	copy fasta	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	1/1	a0003	87	108	17	28	47	6	8	copy fasta	C5orf46	chr5	147887722	147911538
C5orf47_chr5_173984170_174011140	1/1	a0001	176	371	91	67	155	17	39	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	a0002	176	5	1	2	0	0	2	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	a0003	176	4	1	1	1	0	1	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	a0004	176	2	1	0	0	1	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf52_chr5_157666533_157685158	1/1	a0001	159	195	12	37	106	13	25	copy fasta	C5orf52	chr5	157666533	157685158
C5orf52_chr5_157666533_157685158	0/0	a0002	159	81	31	11	32	0	7	copy fasta	C5orf52	chr5	157666533	157685158
C5orf52_chr5_157666533_157685158	0/0	a0003	159	77	25	18	25	2	7	copy fasta	C5orf52	chr5	157666533	157685158
C5orf52_chr5_157666533_157685158	0/0	a0004	159	58	22	11	21	3	1	copy fasta	C5orf52	chr5	157666533	157685158
C5orf52_chr5_157666533_157685158	0/0	a0005	159	4	4	0	0	0	0	copy fasta	C5orf52	chr5	157666533	157685158
C5orf52_chr5_157666533_157685158	0/0	a0006	159	2	2	0	0	0	0	copy fasta	C5orf52	chr5	157666533	157685158
C5orf52_chr5_157666533_157685158	0/0	a0007	159	1	0	1	0	0	0	copy fasta	C5orf52	chr5	157666533	157685158
C5orf58_chr5_170227985_170251231	1/1	a0001	81	222	52	43	94	8	23	copy fasta	C5orf58	chr5	170227985	170251231
C5orf58_chr5_170227985_170251231	0/0	a0002	81	203	41	43	90	10	19	copy fasta	C5orf58	chr5	170227985	170251231
C5orf58_chr5_170227985_170251231	0/0	a0003	81	1	1	0	0	0	0	copy fasta	C5orf58	chr5	170227985	170251231
C5orf63_chr5_127046304_127078502	1/1	a0001	115	350	86	56	156	8	42	copy fasta	C5orf63	chr5	127046304	127078502
C6_chr5_41137116_41218532	0/0	a0001	934	187	38	37	80	6	26	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	1/1	a0002	934	177	37	25	91	10	12	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0003	934	8	0	0	8	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0004	934	3	2	1	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0005	934	3	3	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0006	934	3	3	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0007	934	2	0	2	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0008	934	2	0	0	2	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0009	934	2	0	0	2	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0010	934	2	2	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0011	934	2	2	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0012	934	2	2	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0013	934	1	0	0	1	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0014	934	1	0	0	0	0	1	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0015	934	1	1	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0016	934	1	0	1	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0017	934	1	0	0	1	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0018	934	1	1	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0019	934	1	1	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0020	934	1	0	0	1	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	a0021	934	1	0	0	0	0	1	copy fasta	C6	chr5	41137116	41218532
C6orf118_chr6_165274664_165314605	1/1	a0001	469	167	13	30	101	2	19	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	a0002	469	137	33	28	50	6	20	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	a0003	469	29	26	3	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	a0004	469	7	4	2	0	0	1	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	a0005	469	7	7	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605