JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C6orf118_chr6_165274664_165314605	0/0	a0006	469	3	3	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	a0007	469	2	2	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	a0008	497	1	1	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	a0009	469	1	1	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	a0010	469	1	0	1	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	a0011	469	1	1	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	a0012	469	1	0	0	1	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	a0013	469	1	1	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	a0014	469	1	1	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	a0015	469	1	1	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf120_chr6_169697126_169711360	1/1	a0001	191	411	93	67	205	8	36	copy fasta	C6orf120	chr6	169697126	169711360
C6orf120_chr6_169697126_169711360	0/0	a0002	191	2	2	0	0	0	0	copy fasta	C6orf120	chr6	169697126	169711360
C6orf120_chr6_169697126_169711360	0/0	a0003	191	1	0	0	1	0	0	copy fasta	C6orf120	chr6	169697126	169711360
C6orf120_chr6_169697126_169711360	0/0	a0004	191	1	1	0	0	0	0	copy fasta	C6orf120	chr6	169697126	169711360
C6orf120_chr6_169697126_169711360	0/0	a0005	191	1	0	1	0	0	0	copy fasta	C6orf120	chr6	169697126	169711360
C6orf132_chr6_42096119_42147620	1/0	a0001	1188	126	6	28	64	7	20	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0002	1188	72	15	7	43	1	6	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/1	a0003	1188	57	27	10	10	3	6	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0004	1188	20	6	7	5	1	1	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0005	1188	13	10	2	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0006	1188	12	1	7	0	2	2	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0007	1177	7	0	4	0	3	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0008	1188	7	6	1	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0009	1188	5	0	5	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0010	1188	5	5	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0011	1186	3	0	0	0	0	3	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0012	1188	3	3	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0013	1188	2	0	1	0	1	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0014	1188	2	0	0	1	0	1	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0015	1188	2	2	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0016	1188	2	0	2	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0017	1188	2	2	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0018	1177	2	0	2	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0019	1188	2	0	0	0	0	2	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0020	1188	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0021	1188	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0022	1188	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0023	1188	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0024	1188	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0025	1188	1	0	0	0	0	1	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0026	1188	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0027	1188	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0028	1188	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0029	1188	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0030	1188	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0031	1188	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0032	1188	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0033	1188	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0034	1188	1	0	1	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0035	1188	1	0	1	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620