JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C6orf132_chr6_42096119_42147620	0/0	a0036	1188	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0037	1188	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0038	1188	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	a0039	1188	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf136_chr6_30642133_30658207	0/1	a0001	496	368	84	67	161	14	41	copy fasta	C6orf136	chr6	30642133	30658207
C6orf136_chr6_30642133_30658207	0/0	a0002	496	17	10	5	0	2	0	copy fasta	C6orf136	chr6	30642133	30658207
C6orf136_chr6_30642133_30658207	0/0	a0003	496	15	0	0	15	0	0	copy fasta	C6orf136	chr6	30642133	30658207
C6orf136_chr6_30642133_30658207	0/0	a0004	496	8	0	0	7	0	1	copy fasta	C6orf136	chr6	30642133	30658207
C6orf136_chr6_30642133_30658207	0/0	a0005	496	1	0	0	1	0	0	copy fasta	C6orf136	chr6	30642133	30658207
C6orf141_chr6_49545668_49557095	0/1	a0001	244	373	57	63	191	16	45	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	0/0	a0002	244	28	24	1	0	2	1	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	1/0	a0003	244	8	7	0	0	0	0	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	0/0	a0004	244	3	1	2	0	0	0	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	0/0	a0005	244	1	0	0	1	0	0	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	0/0	a0006	244	1	1	0	0	0	0	copy fasta	C6orf141	chr6	49545668	49557095
C6orf15_chr6_31106223_31117575	0/1	a0001	325	209	39	31	104	11	23	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	a0002	325	60	0	9	45	1	5	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	a0003	325	33	4	3	23	1	2	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	a0004	325	26	0	0	21	0	5	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	a0005	325	26	15	6	0	1	4	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	a0006	325	20	6	7	6	0	1	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	a0007	325	18	4	4	4	1	5	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	a0008	325	15	9	4	0	2	0	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	a0009	314	13	10	2	0	0	1	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	a0010	325	7	0	5	0	1	1	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	a0011	325	5	1	3	0	0	1	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	a0012	325	2	2	0	0	0	0	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	a0013	303	1	1	0	0	0	0	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	a0014	325	1	0	0	1	0	0	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	a0015	325	1	1	0	0	0	0	copy fasta	C6orf15	chr6	31106223	31117575
C6orf163_chr6_87339813_87370463	1/1	a0001	329	422	79	72	207	16	46	copy fasta	C6orf163	chr6	87339813	87370463
C6orf163_chr6_87339813_87370463	0/0	a0002	329	9	9	0	0	0	0	copy fasta	C6orf163	chr6	87339813	87370463
C6orf163_chr6_87339813_87370463	0/0	a0003	329	4	2	2	0	0	0	copy fasta	C6orf163	chr6	87339813	87370463
C6orf163_chr6_87339813_87370463	0/0	a0004	329	1	0	0	1	0	0	copy fasta	C6orf163	chr6	87339813	87370463
C6orf226_chr6_42885265_42895821	1/1	a0001	101	386	88	77	160	18	41	copy fasta	C6orf226	chr6	42885265	42895821
C6orf226_chr6_42885265_42895821	0/0	a0002	59	6	2	3	0	0	1	copy fasta	C6orf226	chr6	42885265	42895821
C6orf226_chr6_42885265_42895821	0/0	a0003	101	2	2	0	0	0	0	copy fasta	C6orf226	chr6	42885265	42895821
C6orf226_chr6_42885265_42895821	0/0	a0004	101	2	2	0	0	0	0	copy fasta	C6orf226	chr6	42885265	42895821
C6orf47_chr6_31653298_31665778	0/1	a0001	294	292	54	42	144	14	37	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	a0002	294	71	7	18	42	1	3	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	a0003	294	61	29	16	5	3	8	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	a0004	294	3	0	0	3	0	0	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	a0005	294	2	2	0	0	0	0	copy fasta	C6orf47	chr6	31653298	31665778
C6orf52_chr6_10666422_10699616	1/1	a0001	152	197	21	55	87	6	26	copy fasta	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	a0002	152	84	70	5	5	0	4	copy fasta	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	a0003	152	3	3	0	0	0	0	copy fasta	C6orf52	chr6	10666422	10699616
C6orf58_chr6_127572174_127596820	1/0	a0001	330	438	78	77	216	18	48	copy fasta	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	a0002	330	7	7	0	0	0	0	copy fasta	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	a0003	330	4	4	0	0	0	0	copy fasta	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	a0004	330	2	0	2	0	0	0	copy fasta	C6orf58	chr6	127572174	127596820