JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C6orf58_chr6_127572174_127596820	0/0	a0005	330	1	0	1	0	0	0	copy fasta	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/1	a0006	330	1	0	0	0	0	0	copy fasta	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	a0007	330	1	1	0	0	0	0	copy fasta	C6orf58	chr6	127572174	127596820
C6orf62_chr6_24699861_24724154	1/1	a0001	229	414	90	78	182	18	44	copy fasta	C6orf62	chr6	24699861	24724154
C6orf89_chr6_36880952_36933964	1/1	a0001	347	393	92	71	179	12	37	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	a0002	347	1	0	0	0	0	1	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	a0003	347	1	0	0	1	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	a0004	347	1	0	1	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C7_chr5_40904497_40989643	1/0	a0001	843	137	59	23	46	3	5	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0002	843	116	17	20	66	2	11	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/1	a0003	843	41	1	2	28	2	7	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0004	843	23	0	1	22	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0005	843	19	3	7	5	1	3	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0006	843	9	1	3	0	2	3	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0007	843	8	1	5	0	2	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0008	843	7	0	2	5	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0009	843	3	0	0	3	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0010	843	3	0	0	2	0	1	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0011	843	2	0	0	2	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0012	843	2	0	1	1	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0013	843	1	0	0	1	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0014	843	1	1	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0015	843	1	0	0	1	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0016	843	1	0	1	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0017	843	1	1	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0018	843	1	1	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0019	401	1	0	1	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0020	843	1	0	0	1	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0021	843	1	1	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	a0022	843	1	0	0	1	0	0	copy fasta	C7	chr5	40904497	40989643
C7orf25_chr7_42904273_42917070	1/1	a0001	421	383	92	70	163	14	42	copy fasta	C7orf25	chr7	42904273	42917070
C7orf25_chr7_42904273_42917070	0/0	a0002	421	1	0	0	1	0	0	copy fasta	C7orf25	chr7	42904273	42917070
C7orf31_chr7_25129692_25185354	0/1	a0001	590	86	6	19	50	4	6	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0002	590	82	5	14	41	4	18	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	1/0	a0003	590	73	5	15	42	2	8	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0004	590	45	3	1	35	2	4	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0005	590	30	11	4	13	1	1	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0006	590	26	23	2	0	0	1	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0007	590	21	17	4	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0008	590	11	8	3	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0009	590	6	6	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0010	590	6	0	3	0	1	2	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0011	590	4	0	1	0	2	1	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0012	590	3	3	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0013	590	3	3	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0014	590	2	0	2	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0015	590	2	0	0	2	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0016	590	2	2	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0017	590	2	0	0	0	0	2	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0018	590	2	0	0	0	0	2	copy fasta	C7orf31	chr7	25129692	25185354