JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C7orf31_chr7_25129692_25185354	0/0	a0019	590	1	0	0	1	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0020	336	1	1	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0021	590	1	0	0	1	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0022	590	1	0	0	1	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0023	590	1	0	0	1	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0024	590	1	1	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0025	590	1	0	1	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0026	590	1	0	0	1	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0027	590	1	0	0	0	0	1	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	a0028	590	1	0	1	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf33_chr7_148585766_148620860	1/1	a0001	177	418	81	75	198	17	45	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	a0002	177	11	11	0	0	0	0	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	a0003	1	9	2	5	0	1	1	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	a0004	177	4	4	0	0	0	0	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	a0005	177	1	0	0	1	0	0	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	a0006	177	1	0	0	1	0	0	copy fasta	C7orf33	chr7	148585766	148620860
C7orf50_chr7_992006_1143247	1/1	a0001	194	305	80	68	110	14	31	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	a0002	194	14	14	0	0	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	a0003	194	1	0	0	0	0	1	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	a0004	194	1	0	0	0	0	1	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	a0005	194	1	1	0	0	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	a0006	194	1	1	0	0	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	a0007	194	1	0	0	0	0	1	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	a0008	194	1	0	0	0	0	1	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	a0009	23	1	0	0	0	0	1	copy fasta	C7orf50	chr7	992006	1143247
C7orf57_chr7_48030543_48066297	0/1	a0001	295	151	41	29	67	3	10	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	a0002	295	147	25	30	64	12	16	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	1/0	a0003	295	100	25	9	53	1	11	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	a0004	295	3	0	0	3	0	0	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	a0005	295	1	0	0	0	0	1	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	a0006	295	1	1	0	0	0	0	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	a0007	295	1	0	0	1	0	0	copy fasta	C7orf57	chr7	48030543	48066297
C8A_chr1_56849797_56923223	1/0	a0001	584	185	48	32	87	7	10	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/1	a0002	584	99	5	12	54	6	21	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	a0003	584	20	12	5	1	0	2	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	a0004	584	17	3	1	10	1	2	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	a0005	584	12	7	0	5	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	a0006	584	9	9	0	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	a0007	584	4	0	0	0	0	4	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	a0008	584	4	0	4	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	a0009	584	2	2	0	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	a0010	584	2	0	2	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	a0011	584	2	0	0	2	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	a0012	584	2	0	0	2	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	a0013	584	1	0	0	0	0	1	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	a0014	584	1	0	1	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	a0015	584	1	1	0	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	a0016	584	1	1	0	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	a0017	584	1	1	0	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	a0018	584	1	1	0	0	0	0	copy fasta	C8A	chr1	56849797	56923223