JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C8A_chr1_56849797_56923223	0/0	a0019	584	1	0	0	1	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	a0020	584	1	0	1	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8B_chr1_56924207_56971015	0/1	a0001	591	382	91	68	165	16	41	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	a0002	591	8	5	2	0	0	1	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	1/0	a0003	591	6	0	2	0	0	3	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	a0004	591	1	1	0	0	0	0	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	a0005	591	1	0	0	1	0	0	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	a0006	591	1	1	0	0	0	0	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	a0007	591	1	1	0	0	0	0	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	a0008	591	1	1	0	0	0	0	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	a0009	591	1	0	0	0	0	1	copy fasta	C8B	chr1	56924207	56971015
C8G_chr9_136940243_136951975	0/1	a0001	202	370	73	75	166	13	42	copy fasta	C8G	chr9	136940243	136951975
C8G_chr9_136940243_136951975	0/0	a0002	202	27	8	6	5	4	4	copy fasta	C8G	chr9	136940243	136951975
C8G_chr9_136940243_136951975	1/0	a0003	202	11	7	1	0	1	1	copy fasta	C8G	chr9	136940243	136951975
C8G_chr9_136940243_136951975	0/0	a0004	202	6	6	0	0	0	0	copy fasta	C8G	chr9	136940243	136951975
C8G_chr9_136940243_136951975	0/0	a0005	202	1	0	0	0	0	1	copy fasta	C8G	chr9	136940243	136951975
C8G_chr9_136940243_136951975	0/0	a0006	202	1	0	0	1	0	0	copy fasta	C8G	chr9	136940243	136951975
C8orf33_chr8_145047467_145061030	1/1	a0001	229	402	90	64	194	16	36	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	a0002	229	2	0	0	2	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	a0003	229	1	1	0	0	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	a0004	229	1	1	0	0	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf34_chr8_68325955_68824023	1/1	a0001	538	91	43	22	13	2	9	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	a0002	538	25	15	4	4	0	2	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	a0003	55	4	4	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	a0004	46	2	2	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	a0005	538	1	1	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	a0006	538	1	1	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	a0007	538	1	0	0	0	0	1	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	a0008	538	1	0	1	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	a0009	538	1	0	1	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	a0010	538	1	0	0	1	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf48_chr8_13561869_13573288	0/1	a0001	319	376	55	59	215	14	32	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	a0002	319	43	13	11	5	0	14	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	a0003	319	8	8	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	1/0	a0004	319	7	6	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	a0005	319	5	4	1	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	a0006	319	3	3	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	a0007	319	2	0	0	2	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	a0008	319	2	0	2	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	a0009	319	1	0	0	0	0	1	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	a0010	319	1	0	0	0	0	1	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	a0011	101	1	1	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	a0012	319	1	1	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	a0013	319	1	1	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	a0014	319	1	0	1	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf58_chr8_22594599_22609142	1/1	a0001	365	311	77	58	117	15	42	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	a0002	365	8	6	2	0	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	a0003	365	4	4	0	0	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	a0004	365	3	0	1	1	1	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	a0005	365	1	0	1	0	0	0	copy fasta	C8orf58	chr8	22594599	22609142