JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C8orf58_chr8_22594599_22609142	0/0	a0006	365	1	0	1	0	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	a0007	365	1	0	0	1	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	a0008	365	1	0	0	1	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	a0009	365	1	1	0	0	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	a0010	365	1	0	1	0	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf74_chr8_10667628_10705590	0/1	a0001	294	288	26	68	138	16	39	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	a0002	294	78	54	0	18	0	6	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	a0003	294	30	0	3	27	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	a0004	294	15	13	1	0	0	1	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	a0005	294	4	0	0	4	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	1/0	a0006	294	4	0	0	3	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	a0007	294	2	2	0	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	a0008	294	1	1	0	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	a0009	294	1	0	0	1	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	a0010	294	1	1	0	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	a0011	294	1	1	0	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	a0012	294	1	1	0	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	a0013	294	1	0	0	1	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	a0014	294	1	0	1	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	a0015	294	1	1	0	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	a0016	294	1	0	1	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf76_chr8_123214967_123246377	1/1	a0001	380	229	90	48	52	10	27	copy fasta	C8orf76	chr8	123214967	123246377
C8orf76_chr8_123214967_123246377	0/0	a0002	380	1	0	0	0	0	1	copy fasta	C8orf76	chr8	123214967	123246377
C8orf82_chr8_144520733_144534111	1/1	a0001	216	371	72	76	165	16	40	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	a0002	216	25	23	2	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	a0003	216	1	1	0	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	a0004	216	1	0	0	1	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf88_chr8_90953471_90990238	1/1	a0001	117	366	90	64	160	14	36	copy fasta	C8orf88	chr8	90953471	90990238
C8orf88_chr8_90953471_90990238	0/0	a0002	117	2	0	0	2	0	0	copy fasta	C8orf88	chr8	90953471	90990238
C8orf89_chr8_73236331_73264530	1/0	a0001	161	184	33	32	89	4	25	copy fasta	C8orf89	chr8	73236331	73264530
C8orf89_chr8_73236331_73264530	0/1	a0002	161	146	58	20	54	0	13	copy fasta	C8orf89	chr8	73236331	73264530
C8orf89_chr8_73236331_73264530	0/0	a0003	161	11	0	0	11	0	0	copy fasta	C8orf89	chr8	73236331	73264530
C8orf89_chr8_73236331_73264530	0/0	a0004	161	3	3	0	0	0	0	copy fasta	C8orf89	chr8	73236331	73264530
C8orf90_chr8_141509671_141523729	1/1	a0001	192	440	97	82	205	11	43	copy fasta	C8orf90	chr8	141509671	141523729
C8orf90_chr8_141509671_141523729	0/0	a0002	192	5	0	0	5	0	0	copy fasta	C8orf90	chr8	141509671	141523729
C8orf90_chr8_141509671_141523729	0/0	a0003	192	1	0	0	0	0	1	copy fasta	C8orf90	chr8	141509671	141523729
C8orf90_chr8_141509671_141523729	0/0	a0004	192	1	0	0	0	0	1	copy fasta	C8orf90	chr8	141509671	141523729
C8orf90_chr8_141509671_141523729	0/0	a0005	223	1	0	0	0	0	1	copy fasta	C8orf90	chr8	141509671	141523729
C8orf90_chr8_141509671_141523729	0/0	a0006	192	1	1	0	0	0	0	copy fasta	C8orf90	chr8	141509671	141523729
C8orf90_chr8_141509671_141523729	0/0	a0007	192	1	0	0	0	1	0	copy fasta	C8orf90	chr8	141509671	141523729
C9_chr5_39279140_39369495	1/0	a0001	559	276	53	53	136	9	24	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/1	a0002	559	86	23	24	20	3	15	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	a0003	559	7	7	0	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	a0004	559	7	7	0	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	a0005	115	4	0	0	4	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	a0006	559	4	4	0	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	a0007	559	3	2	1	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	a0008	559	2	2	0	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	a0009	559	1	1	0	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	a0010	193	1	1	0	0	0	0	copy fasta	C9	chr5	39279140	39369495