JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C9_chr5_39279140_39369495	0/0	a0011	559	1	0	0	1	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	a0012	559	1	0	0	0	0	1	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	a0013	559	1	0	0	1	0	0	copy fasta	C9	chr5	39279140	39369495
C9orf131_chr9_35037240_35050986	0/0	a0001	1079	158	34	43	43	9	29	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	1/1	a0002	1079	134	32	13	74	4	9	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0003	1079	94	9	7	75	0	3	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0004	1079	9	9	0	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0005	1079	7	2	3	0	1	1	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0006	1079	3	3	0	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0007	1079	2	0	0	2	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0008	1079	2	0	0	2	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0009	1079	2	2	0	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0010	1079	1	0	0	0	0	1	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0011	1079	1	1	0	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0012	1079	1	0	0	0	0	1	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0013	1079	1	0	0	0	0	1	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0014	1079	1	0	1	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0015	1079	1	0	0	1	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0016	1079	1	0	0	0	0	1	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0017	1079	1	1	0	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0018	1079	1	0	1	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0019	1022	1	0	0	1	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0020	1079	1	0	0	1	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0021	1079	1	0	0	1	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0022	1079	1	0	0	1	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0023	1079	1	0	0	1	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0024	1079	1	0	0	1	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0025	1079	1	0	0	1	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	a0026	1079	1	1	0	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf152_chr9_110194561_110213159	1/1	a0001	239	461	94	78	223	18	46	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	a0002	239	4	0	0	4	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	a0003	239	1	0	0	1	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf153_chr9_86215265_86264657	1/1	a0001	95	364	72	70	158	18	44	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	a0002	95	18	16	2	0	0	0	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	a0003	95	2	2	0	0	0	0	copy fasta	C9orf153	chr9	86215265	86264657
C9orf24_chr9_34374019_34402810	1/1	a0001	262	446	89	76	219	14	46	copy fasta	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	a0002	262	2	0	2	0	0	0	copy fasta	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	a0003	262	1	1	0	0	0	0	copy fasta	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	a0004	262	1	0	0	1	0	0	copy fasta	C9orf24	chr9	34374019	34402810
C9orf40_chr9_74941583_74957912	1/1	a0001	194	407	80	70	191	18	46	copy fasta	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	a0002	194	2	2	0	0	0	0	copy fasta	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	a0003	194	1	0	0	1	0	0	copy fasta	C9orf40	chr9	74941583	74957912
C9orf43_chr9_113405747_113434690	1/1	a0001	461	267	78	46	102	12	27	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	a0002	461	18	4	9	0	3	2	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	a0003	462	7	0	1	3	1	2	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	a0004	461	6	6	0	0	0	0	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	a0005	461	3	0	1	0	0	2	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	a0006	461	2	0	1	1	0	0	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	a0007	461	1	0	1	0	0	0	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	a0008	461	1	1	0	0	0	0	copy fasta	C9orf43	chr9	113405747	113434690