JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C9orf43_chr9_113405747_113434690	0/0	a0009	462	1	0	0	0	0	1	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	a0010	461	1	0	0	0	0	1	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	a0011	461	1	0	1	0	0	0	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	a0012	461	1	0	0	0	0	1	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	a0013	461	1	1	0	0	0	0	copy fasta	C9orf43	chr9	113405747	113434690
C9orf50_chr9_129607225_129626101	1/1	a0001	431	149	24	29	73	4	17	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	a0002	431	131	43	23	38	7	20	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	a0003	431	78	8	16	45	1	8	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	a0004	431	19	0	0	16	0	3	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	a0005	431	6	6	0	0	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	a0006	431	5	4	1	0	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	a0007	431	5	0	0	5	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	a0008	431	4	4	0	0	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	a0009	431	3	0	2	0	1	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	a0010	431	2	2	0	0	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	a0011	431	2	2	0	0	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	a0012	431	1	1	0	0	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	a0013	431	1	0	0	0	1	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	a0014	431	1	0	0	1	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	a0015	431	1	0	1	0	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	a0016	431	1	0	0	1	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	a0017	431	1	0	0	1	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf57_chr9_72046376_72065613	1/1	a0001	139	446	95	77	216	16	40	copy fasta	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	a0002	139	2	2	0	0	0	0	copy fasta	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	a0003	4	1	0	1	0	0	0	copy fasta	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	a0004	131	1	1	0	0	0	0	copy fasta	C9orf57	chr9	72046376	72065613
C9orf72_chr9_27541546_27578481	1/1	a0001	481	419	85	76	202	8	46	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	a0002	481	19	7	8	0	2	2	copy fasta	C9orf72	chr9	27541546	27578481
C9orf78_chr9_129822290_129840275	1/1	a0001	289	384	88	68	162	18	46	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	a0002	289	1	1	0	0	0	0	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	a0003	289	1	1	0	0	0	0	copy fasta	C9orf78	chr9	129822290	129840275
C9orf85_chr9_71906639_71978457	1/1	a0001	157	249	60	57	90	18	22	copy fasta	C9orf85	chr9	71906639	71978457
C9orf85_chr9_71906639_71978457	0/0	a0002	157	1	0	1	0	0	0	copy fasta	C9orf85	chr9	71906639	71978457
CA10_chr17_51625320_52163714	1/1	a0001	328	156	66	30	38	2	18	copy fasta	CA10	chr17	51625320	52163714
CA11_chr19_48632946_48651187	1/1	a0001	328	392	96	72	174	12	36	copy fasta	CA11	chr19	48632946	48651187
CA12_chr15_63316378_63386846	1/1	a0001	354	353	90	52	162	6	41	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	a0002	354	1	1	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	a0003	354	1	1	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	a0004	354	1	0	0	0	0	1	copy fasta	CA12	chr15	63316378	63386846
CA13_chr8_85240458_85289073	1/1	a0001	262	346	91	62	146	8	37	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	a0002	262	3	0	2	0	0	1	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	a0003	262	1	1	0	0	0	0	copy fasta	CA13	chr8	85240458	85289073
CA14_chr1_150252774_150270078	1/1	a0001	337	410	91	71	185	14	47	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	a0002	337	1	0	0	1	0	0	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	a0003	263	1	0	0	0	0	1	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	a0004	337	1	0	1	0	0	0	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	a0005	337	1	0	0	1	0	0	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	a0006	337	1	1	0	0	0	0	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	a0007	337	1	0	0	1	0	0	copy fasta	CA14	chr1	150252774	150270078
CA1_chr8_85322608_85383113	1/1	a0001	261	297	68	56	126	8	37	copy fasta	CA1	chr8	85322608	85383113