JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CA1_chr8_85322608_85383113	0/0	a0002	261	10	10	0	0	0	0	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	a0003	261	7	7	0	0	0	0	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	a0004	261	6	5	1	0	0	0	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	a0005	261	1	0	0	0	0	1	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	a0006	261	1	0	0	1	0	0	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	a0007	261	1	0	1	0	0	0	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	a0008	261	1	0	0	1	0	0	copy fasta	CA1	chr8	85322608	85383113
CA2_chr8_85459007_85486493	1/1	a0001	260	323	80	56	138	12	35	copy fasta	CA2	chr8	85459007	85486493
CA2_chr8_85459007_85486493	0/0	a0002	260	11	9	2	0	0	0	copy fasta	CA2	chr8	85459007	85486493
CA2_chr8_85459007_85486493	0/0	a0003	260	1	1	0	0	0	0	copy fasta	CA2	chr8	85459007	85486493
CA2_chr8_85459007_85486493	0/0	a0004	260	1	0	0	0	0	1	copy fasta	CA2	chr8	85459007	85486493
CA3_chr8_85433859_85454040	1/0	a0001	260	209	63	29	87	3	26	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/1	a0002	260	148	20	32	69	12	14	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	a0003	260	2	2	0	0	0	0	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	a0004	260	2	0	0	2	0	0	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	a0005	260	1	0	0	0	1	0	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	a0006	260	1	1	0	0	0	0	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	a0007	260	1	0	1	0	0	0	copy fasta	CA3	chr8	85433859	85454040
CA4_chr17_60144973_60164546	1/1	a0001	312	370	92	67	159	14	36	copy fasta	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	a0002	312	4	4	0	0	0	0	copy fasta	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	a0003	312	3	0	0	3	0	0	copy fasta	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	a0004	312	2	2	0	0	0	0	copy fasta	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	a0005	312	1	0	1	0	0	0	copy fasta	CA4	chr17	60144973	60164546
CA5A_chr16_87883013_87941529	1/1	a0001	305	373	72	76	158	15	50	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	a0002	305	13	12	1	0	0	0	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	a0003	305	9	8	1	0	0	0	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	a0004	305	2	0	0	2	0	0	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	a0005	305	2	2	0	0	0	0	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	a0006	305	1	0	0	0	1	0	copy fasta	CA5A	chr16	87883013	87941529
CA5B_chrX_15733270_15793411	1/1	a0001	317	271	67	43	119	11	29	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	a0002	317	1	0	0	1	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	a0003	317	1	0	0	0	0	1	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	a0004	317	1	1	0	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA6_chr1_8940868_8980092	0/1	a0001	308	118	5	26	70	4	12	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	1/0	a0002	308	117	27	23	47	6	13	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	a0003	308	78	8	23	33	6	8	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	a0004	308	29	25	0	0	1	3	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	a0005	308	27	0	2	20	1	4	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	a0006	308	25	1	2	16	0	6	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	a0007	308	22	0	3	18	0	1	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	a0008	308	13	13	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	a0009	308	12	12	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	a0010	308	4	2	0	2	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	a0011	308	3	2	1	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	a0012	308	2	2	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	a0013	94	1	0	0	0	0	1	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	a0014	308	1	1	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA7_chr16_66839414_66859147	1/1	a0001	264	393	94	68	176	14	39	copy fasta	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	a0002	264	1	0	0	0	0	1	copy fasta	CA7	chr16	66839414	66859147
CA8_chr8_60180412_60286400	1/1	a0001	290	341	85	62	142	14	36	copy fasta	CA8	chr8	60180412	60286400