JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CABLES1_chr18_23130485_23265470	0/0	a0007	633	1	0	0	1	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	a0008	633	1	1	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES2_chr20_62383634_62412285	0/1	a0001	478	291	87	62	103	12	26	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	1/0	a0002	478	51	1	5	39	0	5	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	a0003	478	24	0	7	13	2	2	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	a0004	478	19	5	5	1	0	8	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	a0005	155	8	2	2	3	0	1	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	a0006	478	1	1	0	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	a0007	478	1	0	1	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	a0008	478	1	0	0	1	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	a0009	478	1	0	1	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	a0010	478	1	0	0	1	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	a0011	155	1	0	0	1	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	a0012	478	1	0	1	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABP1_chr12_120635626_120672324	1/1	a0001	370	413	92	74	183	18	44	copy fasta	CABP1	chr12	120635626	120672324
CABP1_chr12_120635626_120672324	0/0	a0002	370	3	2	1	0	0	0	copy fasta	CABP1	chr12	120635626	120672324
CABP1_chr12_120635626_120672324	0/0	a0003	370	1	0	0	1	0	0	copy fasta	CABP1	chr12	120635626	120672324
CABP1_chr12_120635626_120672324	0/0	a0004	370	1	0	1	0	0	0	copy fasta	CABP1	chr12	120635626	120672324
CABP2_chr11_67513912_67528446	1/0	a0001	220	218	88	41	67	7	14	copy fasta	CABP2	chr11	67513912	67528446
CABP2_chr11_67513912_67528446	0/1	a0002	220	143	3	30	72	9	28	copy fasta	CABP2	chr11	67513912	67528446
CABP2_chr11_67513912_67528446	0/0	a0003	220	5	0	0	5	0	0	copy fasta	CABP2	chr11	67513912	67528446
CABP2_chr11_67513912_67528446	0/0	a0004	220	3	3	0	0	0	0	copy fasta	CABP2	chr11	67513912	67528446
CABP2_chr11_67513912_67528446	0/0	a0005	220	3	0	0	3	0	0	copy fasta	CABP2	chr11	67513912	67528446
CABP2_chr11_67513912_67528446	0/0	a0006	220	1	0	0	1	0	0	copy fasta	CABP2	chr11	67513912	67528446
CABP2_chr11_67513912_67528446	0/0	a0007	220	1	0	1	0	0	0	copy fasta	CABP2	chr11	67513912	67528446
CABP4_chr11_67450354_67466752	1/1	a0001	275	367	93	66	158	14	34	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	a0002	275	1	1	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP5_chr19_48024383_48049079	1/0	a0001	173	277	70	54	115	11	26	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	a0002	173	49	7	3	30	3	6	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/1	a0003	173	32	4	14	5	0	8	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	a0004	173	5	5	0	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	a0005	173	4	4	0	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	a0006	173	3	3	0	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	a0007	173	3	2	1	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	a0008	173	1	0	0	1	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	a0009	173	1	1	0	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	a0010	173	1	0	0	1	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP7_chr22_29715003_29736833	1/1	a0001	215	438	98	76	198	18	46	copy fasta	CABP7	chr22	29715003	29736833
CABS1_chr4_70329981_70342116	0/0	a0001	395	346	64	69	160	16	37	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/1	a0002	395	62	2	6	44	2	7	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	1/0	a0003	395	22	19	2	0	0	0	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	a0004	395	6	5	1	0	0	0	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	a0005	395	3	3	0	0	0	0	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	a0006	395	2	2	0	0	0	0	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	a0007	395	2	0	0	2	0	0	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	a0008	395	2	0	0	2	0	0	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	a0009	395	1	1	0	0	0	0	copy fasta	CABS1	chr4	70329981	70342116
CABYR_chr18_24134062_24166600	1/1	a0001	380	357	83	64	152	16	40	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	a0002	380	34	0	0	34	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	a0003	388	10	10	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600